PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03265_BGI-A2_v1.0
Common NameF383_23140
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 416aa    MW: 45461.3 Da    PI: 4.9665
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03265_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box171.3e-05444539
                    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                +C+ +++++   +C+++  +lC +C  + H+       H++
  Cotton_A_03265_BGI-A2_v1.0  4 NCDFCGHQRPVVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                                6*****************************65677777766 PP
2zf-B_box24.55.5e-084689441
                    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                                  C++++++++   C++ ++ lCe+C   +H g       H++++
  Cotton_A_03265_BGI-A2_v1.0 46 LLCERCNSQPALVRCTEERVSLCENCDWIGH-GtstsnwtHKRQT 89
                                57*****************************.5588888888766 PP
3CCT62.71.2e-21359402144
                         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                 R +a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Cotton_A_03265_BGI-A2_v1.0 359 RSNAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 402
                                 899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.1E-8547IPR000315B-box-type zinc finger
PROSITE profilePS501199.3547IPR000315B-box-type zinc finger
CDDcd000211.53E-7547No hitNo description
PROSITE profilePS501198.664390IPR000315B-box-type zinc finger
CDDcd000212.99E-44790No hitNo description
SMARTSM003364.94890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.448359401IPR010402CCT domain
PfamPF062033.1E-16359401IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGYNCDFCGH QRPVVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPALVRC  60
TEERVSLCEN CDWIGHGTST SNWTHKRQTI NCYSGCPSSA ELSSLWPFFW QSPSPGESTC  120
EKELGLMSIT ENIETTSWGP TGNTVSQNKN SDGVAEVNND NNADMGSGWD GSSSILELRS  180
PPPLDQPAGV TDTSLPKVSC PQTKRPLLCE DDLYDDFNMD EVDLNLDNYE ELFGVALNHS  240
EELFVNGGID SLFRTNDLSA ADSDCRGAVA AEGSSVGLVN AIQPACSNGA SADSVMSNKT  300
DSVLCFTGRQ AHSSLSFSGL TGESSGADYQ DCGASSMLLM GEPPWCPPCT ESSFQSSTRS  360
NAVMRYKEKK KTRKFEKRVR YASRKARADV RKRVKGRFVK AGDAYDFDPL NQTQSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017623608.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017623610.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_017623611.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-147COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0B0MMJ40.0A0A0B0MMJ4_GOSAR; Zinc finger CONSTANS-LIKE 9-like protein
STRINGGorai.004G061000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-122CONSTANS-like 9