PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03221_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 218aa    MW: 24739.9 Da    PI: 5.2242
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03221_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1884133355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+GVr ++ +g+++AeIrd + ng   r++lg+f+t+e Aa a+++a+ + +g
  Cotton_A_03221_BGI-A2_v1.0  84 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTPEAAALAYDQAAFSTRG 133
                                 9*******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.85383141IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2283143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-3083141IPR001471AP2/ERF domain
SMARTSM003802.7E-3683147IPR001471AP2/ERF domain
PRINTSPR003672.1E-108495IPR001471AP2/ERF domain
PfamPF008471.9E-1284133IPR001471AP2/ERF domain
CDDcd000181.47E-1984143No hitNo description
PRINTSPR003672.1E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEEFFQYHSS SQALFRLPSP STETLPGFWD ELLLNFNDFE EMVWEDMAAA ALDESKNSAN  60
GIKEEGVTSD IPKMEELPKE EKAYRGVRKR PWGKYAAEIR DSTRNGVRVW LGTFDTPEAA  120
ALAYDQAAFS TRGPSATLNF PVDVVRESLG SIKYQCDEGC SPVLALKKRH CLRKRTKRNK  180
MVSTQKEVIS RETRQQKNLV VLEDLGSDYL EQLLTCSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-26801411172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5891031e-130JX589103.1 Gossypium hirsutum clone NBRI_GE23728 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016685887.11e-160PREDICTED: ethylene-responsive transcription factor 1B-like
TrEMBLA0A1U8J6A81e-158A0A1U8J6A8_GOSHI; ethylene-responsive transcription factor 1B-like
TrEMBLA0A2P5X0U41e-158A0A2P5X0U4_GOSBA; Uncharacterized protein
STRINGGorai.004G057000.11e-145(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2434534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-56ethylene response factor 1