PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_03163_BGI-A2_v1.0 | ||||||||
Common Name | F383_27117 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRF | ||||||||
Protein Properties | Length: 260aa MW: 29940.7 Da PI: 9.3386 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.4 | 1.2e-23 | 74 | 118 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+ ++ ++k+CErH+hrg++rsrk++ee Cotton_A_03163_BGI-A2_v1.0 74 DPEPGRCRRTDGKKWRCSKLAYTDSKYCERHMHRGKNRSRKHVEE 118 79*****************************************97 PP | |||||||
2 | QLQ | 45.2 | 2.9e-16 | 13 | 46 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FTa+Q+++L +Q+l++Ky++ + P+P++Ll+ i Cotton_A_03163_BGI-A2_v1.0 13 PFTATQWEELQNQVLIFKYMVLGIPIPSYLLFTI 46 8*****************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.0E-8 | 12 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 17.788 | 13 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-11 | 13 | 46 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.507 | 74 | 118 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.9E-19 | 75 | 117 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MMMMSGRNSS GFPFTATQWE ELQNQVLIFK YMVLGIPIPS YLLFTIKTSF LEPHQHDKIG 60 WNCGGEMRME RKVDPEPGRC RRTDGKKWRC SKLAYTDSKY CERHMHRGKN RSRKHVEEEE 120 AASTGITMVN PSSTATQSLS LSLSSFETHA STEKPTLCLL GSSSYRLKQV VYHEPCGTRR 180 SFSGSSMEDG TSWQLQSLKQ SKHDQDDDDK RKPKRKIHRF IDEWPPKHRD SWLDYDDYKS 240 SKSSSDSTTK LSISISSTFT |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616704 | 1e-162 | JX616704.1 Gossypium hirsutum clone NBRI_GE61556 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618722.1 | 0.0 | PREDICTED: growth-regulating factor 6-like | ||||
TrEMBL | A0A0B0MX80 | 0.0 | A0A0B0MX80_GOSAR; Putative global transcription activator SNF2L2 | ||||
STRING | Gorai.013G225300.1 | 1e-111 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14101 | 18 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 2e-43 | growth-regulating factor 5 |