PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03077_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 528aa    MW: 60637.7 Da    PI: 8.1476
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03077_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.8e-0690111527
                                 --SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                                 +C f++  G+C+ GdrC+F Hgp
  Cotton_A_03077_BGI-A2_v1.0  90 PCYFYFN-GFCNKGDRCSFLHGP 111
                                 7999999.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.221635IPR000571Zinc finger, CCCH-type
PfamPF156634.5E-11765No hitNo description
SMARTSM003560.058734IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.7793763IPR000571Zinc finger, CCCH-type
SMARTSM003560.933962IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-685110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.33385112IPR000571Zinc finger, CCCH-type
SMARTSM003560.00686111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-690113IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEEQFLKRNT DCVYFLASPF TCKKGLDCEY RHSEVARLNP RDCWYWLAGN CINPTCGFRH  60
PPLDVHSQVP SESAALPYQC STAANKTNLP CYFYFNGFCN KGDRCSFLHG PDDSTITVNS  120
LKTGALPLDR KTFVENDVGA VQTETHPNPS KTAPNSIKDT GVQLKTNLQQ PVPKTMIKRS  180
VSPKTSVFDL EQAGFVSSQS LLLKEGITQT GSPICTDESL EEQLDDPFEP EERWESSEGF  240
DVLVDNKSED LDYGNDSEYQ KDPEEEQTDY FFSYDYEDSV QHETRYPDLE FSYDRDVYDA  300
YEGSDNEYIF NNPRNPFVHP GDKRRLDSMF SQKRRRLLPF ERSIDVDLRD YLSKRRVVKG  360
NPLKCLSRSE YSHLISRSLE RPRRRSMGRK LSGRLASKVG KHYIESTGGQ VGFRNGTNRH  420
GWLKHLEPNR SIRRPYREKK LPRRKSVSSE VSRNLISRER KYEDASTAFT GPKTLAQIRE  480
EKRKTEENGG KMRHSIITAS ADFQGPKPLS EILKDKERLA KKGTNFLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1322335KRRLDSMFSQKRRR
2332336KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017616448.10.0PREDICTED: zinc finger CCCH domain-containing protein 34-like
TrEMBLA0A1U8N0630.0A0A1U8N063_GOSHI; zinc finger CCCH domain-containing protein 34-like
STRINGGorai.013G233700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710