PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_03022_BGI-A2_v1.0
Common NameF383_03755
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 259aa    MW: 29374.6 Da    PI: 5.375
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_03022_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.2e-181461148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g+WT+eEd++l+++++++G g+W++ ++  g+ R++k+c++rw +yl
  Cotton_A_03022_BGI-A2_v1.0 14 KGPWTPEEDQILINYIQLHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                                79******************************99************97 PP
2Myb_DNA-binding51.91.8e-1667112148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg++T eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Cotton_A_03022_BGI-A2_v1.0  67 RGNFTREEEDTIINLHEMLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                                 89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.7E-27564IPR009057Homeodomain-like
PROSITE profilePS5129418.159961IPR017930Myb domain
SuperFamilySSF466891.32E-3110108IPR009057Homeodomain-like
SMARTSM007172.4E-151363IPR001005SANT/Myb domain
PfamPF002492.7E-171461IPR001005SANT/Myb domain
CDDcd001677.48E-121661No hitNo description
PROSITE profilePS5129425.21962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2665117IPR009057Homeodomain-like
SMARTSM007171.6E-1466114IPR001005SANT/Myb domain
PfamPF002492.2E-1567112IPR001005SANT/Myb domain
CDDcd001673.20E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTPE EDQILINYIQ LHGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TREEEDTIIN LHEMLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKHSH  120
GSNANNRQPI DPSEDIKREQ QPVTIYSPVS PPQSSSDVST SENNSNSNTF TTNTETNEDV  180
SEIDENFWSE VLSADNSSMA ADFRVVGSDQ YFPSSPPPPL PALETVNGCG SNLYDTDANM  240
DFWYNLFTRA ADLPELPEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5915285e-66JX591528.1 Gossypium hirsutum clone NBRI_GE26674 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017647090.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX89e-86MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A0B0PV750.0A0A0B0PV75_GOSAR; Myb-related Myb4
STRINGGorai.007G146200.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-82myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]