PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_03013_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 260aa MW: 30113.9 Da PI: 6.7028 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.6 | 1.5e-50 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrF P+deelv++yL kk++++++ ++ e+d++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat+sgyW Cotton_A_03013_BGI-A2_v1.0 10 LPPGFRFYPSDEELVCHYLYKKIANEQVLK-GTLVEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYW 91 79************************9655.78***************88888999*************************** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+ vl ++e+vg++ktLvfy++rap+g kt W+mhe+rl Cotton_A_03013_BGI-A2_v1.0 92 KATGKDRMVLYPtTEEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRL 137 *********99868889***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 8 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.136 | 10 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 11 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 260 aa Download sequence Send to blast |
MGLRDIGATL PPGFRFYPSD EELVCHYLYK KIANEQVLKG TLVEIDLHTC EPWQLPEVAK 60 LNANEWYFFS FRDRKYATGF RTNRATTSGY WKATGKDRMV LYPTTEEVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLHTP HLPPKEEWVL CRVFHKSKEE NSTKLSSPMM LETSSTHHAH 180 ETAYQHISSL STATPTYQSH AQCLLNLLQY NSHQENNSNE VSSKVDDGYE FLWDMEENSL 240 GHGVASNLED MRFEINNSLV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-48 | 9 | 156 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 6e-48 | 9 | 156 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-48 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-48 | 9 | 156 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC847217 | 0.0 | KC847217.1 Gossypium hirsutum NAC domain protein NAC40 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017648346.1 | 0.0 | PREDICTED: protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 1e-62 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0B0PUA0 | 0.0 | A0A0B0PUA0_GOSAR; NAC domain-containing 21/22-like protein | ||||
TrEMBL | A0A1U8L2M4 | 0.0 | A0A1U8L2M4_GOSHI; protein CUP-SHAPED COTYLEDON 3-like | ||||
STRING | Gorai.007G147300.1 | 1e-178 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3436 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28530.1 | 5e-91 | NAC domain containing protein 74 |