PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02933_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARF
Protein Properties Length: 907aa    MW: 100341 Da    PI: 6.3827
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02933_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23130231199
                                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                 f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +
  Cotton_A_02933_BGI-A2_v1.0 130 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVA 210
                                 99*****************************8544444..48***************************************** PP

                                 T-EEEEEE-SSSEE..EEEEE-S CS
                          B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                 gD+v+F   ++++ +l+++++r+
  Cotton_A_02933_BGI-A2_v1.0 211 GDSVLFI--WNDKNQLLLGIRRA 231
                                 *******..7888889****997 PP
2Auxin_resp119.82.1e-39256339183
                  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                                 aahaa+t+s F+++YnPras+seFv+ ++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+
  Cotton_A_02933_BGI-A2_v1.0 256 AAHAAATNSRFTIFYNPRASPSEFVITLSKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSV 338
                                 79*********************************9789******************************************98 PP

                  Auxin_resp  83 k 83 
                                 k
  Cotton_A_02933_BGI-A2_v1.0 339 K 339
                                 5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.71E-49115259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-42123245IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-21129230No hitNo description
PfamPF023625.3E-22130231IPR003340B3 DNA binding domain
SMARTSM010192.8E-24130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52130232IPR003340B3 DNA binding domain
PfamPF065072.7E-34256339IPR010525Auxin response factor
PfamPF023094.4E-8763863IPR033389AUX/IAA domain
SuperFamilySSF542773.27E-7766849No hitNo description
PROSITE profilePS5174524.264774858IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 907 aa     Download sequence    Send to blast
MRLSSAGFNP PNQEDTAGEK RVLNSELWHA CAGPLVSLPH VGSRVVYFPQ GHSEQVAATT  60
NKEVDAHIPN YPSLPPQLIC QLHNVTMHAD VETDEVYAQM TLQPLSPQEQ KEAYLPAELG  120
TPSKQPTNYF CKTLTASDTS THGGFSVPRR AAEKVFPPLD FSQQPPAQEL IARDLHDNEW  180
KFRHIFRGQP KRHLLTTGWS VFVSAKRLVA GDSVLFIWND KNQLLLGIRR ANRPQTVMPS  240
SVLSSDSMHL GLLAAAAHAA ATNSRFTIFY NPRASPSEFV ITLSKYVKAV YHTRVSVGMR  300
FRMLFETEES SVRRYMGTIT GISDLDPVRW PNSHWRSVKV GWDESTAGER QPRVSLWEVE  360
PLTTFPMYPS PFPLRLKRPW PPGLPSFHGL KDDDLGMSSL MWLQGDAGRG MQHLNFQGIG  420
VSPWMQPRLD ASMLGLQTDM YQAMAAAALQ EMRTVDPSRS GAASLQFQQP QNGPCRPAAL  480
VQPQMLQQSL PRAILQGVED NQHQSQPHLL QQQLQHQNSF NNQQQHQQQP LFNDQQQQQP  540
QHSMSQQHQQ LVDHQQIPSP VSAMSQYASV SQSQSSPLQS IPSLGQQQSF SDSNGNPVTS  600
PVVSPLHSLL GSFPQDESSN LLNLPRTTPV MTTSAWPSKR AAVDVLSSGS PQCVLPQVEQ  660
LGPSQTNMSQ NSISLPPFPG RECSIDQGGT DPQSHLLFGV NIEPSSVLMQ NGMSGLRGVG  720
TDSDSTSIPF FSNYMSTAGN DFSVNPAMAP SSCIDESGFL QSQENVGQSN PQTRTFVKVY  780
KSGSFGRSLD ISAFSNYNEL RSELAHMFGL EGQLEDPLRS GWQLVFVDRE NDVLLLGDDP  840
WPEFVNSVWC IKILSPQEVQ QMGKRGLELL NSVPVQRLSN GSCDDYVSRQ DSRNLSSGIA  900
SVGSLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601436041388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649179.10.0PREDICTED: auxin response factor 6
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1U8KFE00.0A0A1U8KFE0_GOSHI; Auxin response factor
TrEMBLA0A1U8MGJ80.0A0A1U8MGJ8_GOSHI; Auxin response factor
STRINGGorai.011G048200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]