PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02913_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 463aa MW: 50231.9 Da PI: 7.5743

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02913_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121	1.4e-37	83	240	2	136
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................... 65 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a ai el+++ Cotton_A_02913_BGI-A2_v1.0 83 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAASDAIAELPSLntsfpdtpkqlsdekrgsg 165 689***********************************************************7777766666666666666 PP TCP 66 ....ssssaseceaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 +++sa+ +++ s+ +++ s +k+a+s++++ ++++s + ++ + r kar+rarert++++ +++ Cotton_A_02913_BGI-A2_v1.0 166 gieqGFDSAEVELDGDPSNYQQHLSLSKSASSSTSETRKNSSLSLSRSGTRVNRVKARERARERTAKEKEGHQQQ 240 555555555333666666666666666777777777777777776777777999*******888776655444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.0E-42	84	235	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.105	85	143	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	9.946	216	234	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MEVDEIQTQT CKFSTVGNGR NETSKIGQKG SDSNFPDDEE DGELIKRAAA TAVANGGVAD 60 TIGTNSLRGW HNSSRIIRVS RASGGKDRHS KVWTSKGLRD RRVRLSVTTA IQFYDLQDRL 120 GYDQPSKAVE WLIKAASDAI AELPSLNTSF PDTPKQLSDE KRGSGGIEQG FDSAEVELDG 180 DPSNYQQHLS LSKSASSSTS ETRKNSSLSL SRSGTRVNRV KARERARERT AKEKEGHQQQ 240 NVNPISQNSS FTELLTSGIG NVSNNNTSPS ASASASAHQD PNAESDFYQK ANSTARLWPV 300 TPMDYFTSGL LGPSSSRGHH SSGFPGGQIH LVNSLQQPMT TPPFTVSGEN HQEMQHFSFV 360 PNPDHLIPVA TTQPGQGVDY NLNFTISSGL AGFNRGTLQS NSPFLPHHLQ RFSSIDGSSP 420 LYIGTPPVEN HHHHQFTVGL DGRLQLCYGD GNRSSDQKGK GKN

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MEVDEIQTQT CKFSTVGNGR NETSKIGQKG SDSNFPDDEE DGELIKRAAA TAVANGGVAD  60
TIGTNSLRGW HNSSRIIRVS RASGGKDRHS KVWTSKGLRD RRVRLSVTTA IQFYDLQDRL  120
GYDQPSKAVE WLIKAASDAI AELPSLNTSF PDTPKQLSDE KRGSGGIEQG FDSAEVELDG  180
DPSNYQQHLS LSKSASSSTS ETRKNSSLSL SRSGTRVNRV KARERARERT AKEKEGHQQQ  240
NVNPISQNSS FTELLTSGIG NVSNNNTSPS ASASASAHQD PNAESDFYQK ANSTARLWPV  300
TPMDYFTSGL LGPSSSRGHH SSGFPGGQIH LVNSLQQPMT TPPFTVSGEN HQEMQHFSFV  360
PNPDHLIPVA TTQPGQGVDY NLNFTISSGL AGFNRGTLQS NSPFLPHHLQ RFSSIDGSSP  420
LYIGTPPVEN HHHHQFTVGL DGRLQLCYGD GNRSSDQKGK GKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	1e-23	90	144	1	55	Putative transcription factor PCF6
5zkt_B	1e-23	90	144	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179, ECO:0000269\|PubMed:26596765}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:26596765}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017649109.1	0.0	PREDICTED: transcription factor TCP2
Refseq	XP_017649110.1	0.0	PREDICTED: transcription factor TCP2
Refseq	XP_017649111.1	0.0	PREDICTED: transcription factor TCP2
Swissprot	Q93V43	4e-76	TCP2_ARATH; Transcription factor TCP2
TrEMBL	A0A2P5QK46	0.0	A0A2P5QK46_GOSBA; Uncharacterized protein
STRING	Gorai.011G046000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7615	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18390.2	2e-42	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375]