PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02815_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 259aa MW: 29936.7 Da PI: 4.9634

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02815_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	61	114	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ F +++ e++ +LA++lgL+ rqV +WFqNrRa++k Cotton_A_02815_BGI-A2_v1.0 61 KKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWK 114 56689************************************************9 PP
2	HD-ZIP_I/II	125.8	1.9e-40	60	152	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 ekkrrls +qvk+LE++F+ +kLeperKv+la+eLglqprqva+WFqnrRAR+ktk lEkdy++Lk++ydalk + ++Leke Cotton_A_02815_BGI-A2_v1.0 60 EKKRRLSMHQVKALEKNFDVGNKLEPERKVKLAEELGLQPRQVAIWFQNRRARWKTKVLEKDYAMLKANYDALKLDYDNLEKE 142 69******************************************************************************* PP HD-ZIP_I/II 84 veeLreelke 93 + L ++l++ Cotton_A_02815_BGI-A2_v1.0 143 KLGLIAKLRD 152 99999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.07E-18	49	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.475	56	116	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	59	120	IPR001356	Homeobox domain
CDD	cd00086	9.37E-16	61	116	No hit	No description
Pfam	PF00046	3.1E-16	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-19	68	115	IPR009057	Homeodomain-like
PRINTS	PR00031	6.8E-6	87	96	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	91	114	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.8E-6	96	112	IPR000047	Helix-turn-helix motif
Pfam	PF02183	7.8E-13	116	157	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MKRLSPSPSL DAFMSISQPK VDYAEEKSSK KHQIYSKEFQ AMLDGLDEED SLEEGGQATE 60 KKRRLSMHQV KALEKNFDVG NKLEPERKVK LAEELGLQPR QVAIWFQNRR ARWKTKVLEK 120 DYAMLKANYD ALKLDYDNLE KEKLGLIAKL RDLKSKLKEE CPSFSVRNKE QGFCENDDDD 180 CNGIVKEESN VMNGSSSSSD SSNNHKWFKP FESRMVMGYT YDEPELVEVE ERCMFSAEES 240 CGFFSVDQAP SLQWYFTGQ

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC243121	1e-172	AC243121.1 Gossypium raimondii clone GR__Ba0142D21-hnv, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017643819.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-6-like isoform X1
TrEMBL	A0A0D2R1L8	1e-174	A0A0D2R1L8_GOSRA; Uncharacterized protein
STRING	Gorai.010G037800.1	1e-174	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22430.1	1e-44	homeobox protein 6