PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02765_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 315aa MW: 34276.6 Da PI: 6.7399

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02765_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.2e-38	38	97	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+++ Cotton_A_02765_BGI-A2_v1.0 38 HQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGILRNVPVGGGCRKAKRTK 97 6899****************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-26	38	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.404	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MQDIHSIEGG CIFGGGVGGG GGGGGGDKRL RSHHHHNHQA LKCPRCDSLN TKFCYYNNYN 60 LSQPRHFCKS CRRYWTKGGI LRNVPVGGGC RKAKRTKTKA SSETTAVAAS ALPPPEQQHC 120 DQRKANSHSS SESSSLTATN SNVAVPNQNN NYSSAAGTAE AVTSHSNLID VSEPKFYGNP 180 NNLGLEPGLL EQGSDCGIFP EIGSFTSLIT SSNNETMSFG FDKVLNGQAL EQGQWQQQHQ 240 KMMRMGGDEI NGGLLDQTVQ VELSNMHSRS ENGFGALDWQ GNEDQGLFDL PNDVDKTYWS 300 QTQWTDQDHH GLYLP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017643859.1	0.0	PREDICTED: dof zinc finger protein DOF5.4-like
TrEMBL	A0A2P5Y492	0.0	A0A2P5Y492_GOSBA; Uncharacterized protein
STRING	Gorai.001G067000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4482	26	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	4e-36	OBF binding protein 4