PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02718_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29647.2 Da PI: 4.7089 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173 | 8.9e-54 | 6 | 133 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv++yLk+k++++++el ++i+evd+yk+ePw+L k + ++ ewyfF +rd+ky++g r+nrat++g Cotton_A_02718_BGI-A2_v1.0 6 LPPGFRFHPTDEELVNYYLKRKINRQEIEL-DIIPEVDLYKCEPWELAeKsFFPRRDPEWYFFGPRDRKYPNGFRTNRATRAG 87 79****************************.99**************84334455778************************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+tgkd++v + +++++g+kktLv+y grap+g +tdWvmheyrl Cotton_A_02718_BGI-A2_v1.0 88 YWKSTGKDRRVSC-QNRAIGMKKTLVYYLGRAPQGIRTDWVMHEYRL 133 *************.8999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-61 | 3 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.324 | 6 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.6E-30 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MAPLGLPPGF RFHPTDEELV NYYLKRKINR QEIELDIIPE VDLYKCEPWE LAEKSFFPRR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QNRAIGMKKT LVYYLGRAPQ 120 GIRTDWVMHE YRLDDNECEG TCGIQEVKRS GYWQDSYALC RVFKKNGITG SETEEQGQSS 180 LTVMDQYCSQ GVIMNDSETM YGEIPIGASS SSCMEEEEDK DDSWMQFITD DPWCSSNCTA 240 AMAGDELSNT GFYNLK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-54 | 2 | 166 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847199 | 7e-53 | KC847199.1 Gossypium hirsutum NAC domain protein NAC22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017645250.1 | 0.0 | PREDICTED: NAC domain-containing protein 86-like isoform X1 | ||||
Swissprot | Q9FFI5 | 2e-84 | NAC86_ARATH; NAC domain-containing protein 86 | ||||
TrEMBL | A0A1U8LEK3 | 1e-172 | A0A1U8LEK3_GOSHI; NAC domain-containing protein 86-like | ||||
STRING | Gorai.001G070700.1 | 1e-173 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8504 | 28 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 1e-119 | NAC domain containing protein 57 |
Publications ? help Back to Top | |||
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