PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02718_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 256aa    MW: 29647.2 Da    PI: 4.7089
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02718_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1738.9e-5461331128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lppGfrFhPtdeelv++yLk+k++++++el ++i+evd+yk+ePw+L  k  +  ++ ewyfF +rd+ky++g r+nrat++g
  Cotton_A_02718_BGI-A2_v1.0   6 LPPGFRFHPTDEELVNYYLKRKINRQEIEL-DIIPEVDLYKCEPWELAeKsFFPRRDPEWYFFGPRDRKYPNGFRTNRATRAG 87 
                                 79****************************.99**************84334455778************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWk+tgkd++v + +++++g+kktLv+y grap+g +tdWvmheyrl
  Cotton_A_02718_BGI-A2_v1.0  88 YWKSTGKDRRVSC-QNRAIGMKKTLVYYLGRAPQGIRTDWVMHEYRL 133
                                 *************.8999***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-613165IPR003441NAC domain
PROSITE profilePS5100558.3246165IPR003441NAC domain
PfamPF023656.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MAPLGLPPGF RFHPTDEELV NYYLKRKINR QEIELDIIPE VDLYKCEPWE LAEKSFFPRR  60
DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVSC QNRAIGMKKT LVYYLGRAPQ  120
GIRTDWVMHE YRLDDNECEG TCGIQEVKRS GYWQDSYALC RVFKKNGITG SETEEQGQSS  180
LTVMDQYCSQ GVIMNDSETM YGEIPIGASS SSCMEEEEDK DDSWMQFITD DPWCSSNCTA  240
AMAGDELSNT GFYNLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-54216611169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8471997e-53KC847199.1 Gossypium hirsutum NAC domain protein NAC22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017645250.10.0PREDICTED: NAC domain-containing protein 86-like isoform X1
SwissprotQ9FFI52e-84NAC86_ARATH; NAC domain-containing protein 86
TrEMBLA0A1U8LEK31e-172A0A1U8LEK3_GOSHI; NAC domain-containing protein 86-like
STRINGGorai.001G070700.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85042839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17730.11e-119NAC domain containing protein 57
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]