PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02692_BGI-A2_v1.0
Common NameF383_24602
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 287aa    MW: 32700 Da    PI: 4.7005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02692_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox629e-2096149356
                                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa++k
  Cotton_A_02692_BGI-A2_v1.0  96 KKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWK 149
                                 56689************************************************9 PP
2HD-ZIP_I/II126.98.7e-4195186192
                 HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                 ekkrrl+ +qv++LE+sFe e+kLeperK++la+eLglqprqva+WFqnrRAR+ktkqlEkdy++L++++++lk++  +L ke
  Cotton_A_02692_BGI-A2_v1.0  95 EKKRRLTVDQVQFLEKSFEVENKLEPERKTQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDTLQASFNTLKADYGNLLKE 177
                                 69********************************************************************************* PP

                 HD-ZIP_I/II  84 veeLreelk 92 
                                 +++L++e+ 
  Cotton_A_02692_BGI-A2_v1.0 178 KDKLKQEVL 186
                                 *****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.13E-2084153IPR009057Homeodomain-like
PROSITE profilePS5007117.70291151IPR001356Homeobox domain
SMARTSM003891.1E-1994155IPR001356Homeobox domain
CDDcd000861.84E-1896152No hitNo description
PfamPF000464.6E-1796149IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-2098158IPR009057Homeodomain-like
PRINTSPR000313.5E-6122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000313.5E-6131147IPR000047Helix-turn-helix motif
PfamPF021839.4E-15151192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAGGRVVSCN NTNSVGGSSN LSVLLQNQRV PSSSEPMDPL FIPRPGSSPY SFFVSGTRSM  60
VSFEDVHGGN RSFFRSFDEE ENGDEDLDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP  120
ERKTQLAKEL GLQPRQVAIW FQNRRARWKT KQLEKDYDTL QASFNTLKAD YGNLLKEKDK  180
LKQEVLQLTD KLVMKEKNNS ELSDVNTVCQ EPPQKPVDSD SPHSSYPFET DQSDTSQDEE  240
DSLSKALFQP SSHIFPKLEG NDYSDPPASS CSYGFHVEDH AFWSSAY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643272.10.0PREDICTED: homeobox-leucine zipper protein HOX20-like isoform X1
SwissprotQ022836e-45HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A0B0P3V00.0A0A0B0P3V0_GOSAR; Homeobox-leucine zipper HAT5-like protein
STRINGGorai.001G073600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-46homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]