PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02633_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bZIP
Protein Properties Length: 614aa    MW: 68786 Da    PI: 9.6401
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02633_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.2e-11281327551
                                 CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                      bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                                 +r+rr++kNRe+A rsR+R++a++ eLe +  +L++eN +Lk+ +ee
  Cotton_A_02633_BGI-A2_v1.0 281 RRQRRMIKNRESAARSRARRQAYTVELELELNQLKQENAKLKQLVEE 327
                                 69************************************988855544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.6E-9277341IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875279327IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.1E-12280327No hitNo description
SuperFamilySSF579596.88E-9281327No hitNo description
PfamPF001701.1E-9281331IPR004827Basic-leucine zipper domain
PROSITE patternPS000360284299IPR004827Basic-leucine zipper domain
Gene3DG3DSA:3.30.190.203.7E-48369423IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
SuperFamilySSF568082.88E-36372499IPR023674Ribosomal protein L1-like
CDDcd004034.63E-57372613IPR028364Ribosomal protein L1/ribosomal biogenesis protein
PfamPF006872.3E-38385609IPR028364Ribosomal protein L1/ribosomal biogenesis protein
Gene3DG3DSA:3.40.50.7902.1E-33425496IPR016095Ribosomal protein L1, 3-layer alpha/beta-sandwich
SuperFamilySSF568081.24E-23529614IPR023674Ribosomal protein L1-like
Gene3DG3DSA:3.30.190.203.7E-48550613IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003723Molecular FunctionRNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 614 aa     Download sequence    Send to blast
MALSESESVA YGGIKKTGSL TQAPESPHEE STPDRSNSSP NKQNSIFSLT LDEIQLKSGK  60
TFGSMNMDEF LANLWNVEEN QQVLSQPEPI DGDKGMGCQP SLARQGSFSV PTPLCKKTVD  120
EVWFEIQKEL PQPREANDVA DHEPPQRQQT LGEITLEDFL IKAGVVQEPS GSSQQNKASP  180
IRINGASLDA NYIMDAPIRN NNASMDANFG MGHMIGLGFP GHQIVSNGYA AGYSIFAQTV  240
MGESSNGTEN GNRTNSLLQP AVAPQNKKRI VDGPPEVVVE RRQRRMIKNR ESAARSRARR  300
QAYTVELELE LNQLKQENAK LKQLVEENDK RRKEEVIVCS VSGLIWSYPF DSLSPTMIWL  360
LVLVFKLQSD ALREAISTIV ANSKEKNRKF TETIELQIGL KNYDPQKDKR FSGSVKLPHI  420
PRPKMKICML GDAQHVEEAE KIGLDYMDVE ALKKLNKNKK LVKKLAKKYH AFLASESVIK  480
QIPRLLGPGL NKAGKFYIRS ALRINEFGLT FHGQTGLSLL WVYEIGFLRK FPTLVTHQES  540
LESKVNETKA MVKFQLKKVL CMGVAVGNVA MEEKQIFQNV QMSVNFLVSL LKKNWQNVRC  600
LYLKSTMGPS NRIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v3p_LA1e-1113666143216Ribosomal protein
4v7e_Cz1e-111366614321660S ribosomal protein L1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1452463KKLNKNKKLVKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605068.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 1
TrEMBLA0A2P5YFX90.0A0A2P5YFX9_GOSBA; Uncharacterized protein
STRINGGorai.013G258300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116522230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44460.16e-59bZIP family protein