PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02566_BGI-A2_v1.0
Common NameF383_20934
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 297aa    MW: 33237.3 Da    PI: 5.041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02566_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-152067148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEd++l+++    G g+W+ +ar  g+ R++k+c++rw +yl
  Cotton_A_02566_BGI-A2_v1.0 20 KGLWSPEEDDKLINYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 67
                                678*******************************************97 PP
2Myb_DNA-binding51.52.3e-1673116146
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 rg+ ++eE+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
  Cotton_A_02566_BGI-A2_v1.0  73 RGAISPEEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                                 7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.51567IPR017930Myb domain
SuperFamilySSF466898.2E-2818114IPR009057Homeodomain-like
SMARTSM007172.3E-111969IPR001005SANT/Myb domain
PfamPF002497.2E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-232174IPR009057Homeodomain-like
CDDcd001673.06E-92367No hitNo description
PROSITE profilePS5129425.52568122IPR017930Myb domain
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PfamPF002492.1E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2575123IPR009057Homeodomain-like
CDDcd001674.44E-1177115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMRKPNNGST ITTTNNKLRK GLWSPEEDDK LINYMLTNGQ GCWSDVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAISPEE EELIVHLHSI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKNSSPNTT DSSSSKFNKD SNPVGFITME QQGVLLPTYL DLSSTSSNSS LQSTVTNPGT  180
AFGATIGYFA TNVNGLYGEN EMLCGEELYM PPLETVRENL KIENTFESNI TTIPTTNNNN  240
INNNNIVDCS MKSENVMTGA AIGNFWLGEE IKVGEWDLED LMKDVSSFPF LDFQSPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271512222128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153551e-145JX615355.1 Gossypium hirsutum clone NBRI_GE59296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017605372.10.0PREDICTED: transcription factor MYB46-like
SwissprotQ9C6U13e-74MYB83_ARATH; Transcription factor MYB83
TrEMBLA0A0B0MHC50.0A0A0B0MHC5_GOSAR; Transcription factor MYB46-like protein
STRINGGorai.013G251100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.11e-70myb domain protein 46
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]