PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02456_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 317aa MW: 35023.6 Da PI: 9.3062 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.5 | 3.5e-14 | 39 | 83 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky Cotton_A_02456_BGI-A2_v1.0 39 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 83 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.35E-17 | 33 | 89 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.291 | 34 | 88 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.8E-19 | 37 | 86 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.0E-7 | 37 | 89 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-11 | 38 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.8E-12 | 39 | 83 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.67E-9 | 41 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0032922 | Biological Process | circadian regulation of gene expression | ||||
GO:0043966 | Biological Process | histone H3 acetylation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MNSSPNPPQP PPPQSSTSTT ATDGSGKKVR KPYTITKSRE SWTEEEHDKF LEALQLFDRD 60 WKKIEDFVGS KTVIQIRSHA QKYFLKVQKN GTIAHVPPPR PKRKAAHPYP QKASKNVLVP 120 LQASMGYPSS INTIAPGYAP WDEASMLMIR FPKGNFPAFS YAYNVTDSAN IGSKGVAKIS 180 NSGVSGIGSS GQTISNSDMS KQGKQASMLH GIPDFAEVYS FIGSVFDPDT DGHVQKLKEM 240 DPINFETVLL LMRNLTVNLC SPDFEPIRKV LSSYDVGTNT DFRATTFLSY YTSPMLHPEQ 300 NLFPVDCYLK SKASDGN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00338 | DAP | Transfer from AT3G09600 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486161.1 | 1e-163 | PREDICTED: protein REVEILLE 8-like isoform X2 | ||||
Refseq | XP_016671120.1 | 1e-163 | PREDICTED: protein REVEILLE 8-like isoform X2 | ||||
Refseq | XP_017608663.1 | 1e-163 | PREDICTED: protein REVEILLE 8-like isoform X2 | ||||
Swissprot | Q8RWU3 | 1e-135 | RVE8_ARATH; Protein REVEILLE 8 | ||||
TrEMBL | A0A0B0MTA7 | 0.0 | A0A0B0MTA7_GOSAR; Transcription factor ASG4-like protein | ||||
STRING | Gorai.006G178000.1 | 1e-161 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9303 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G09600.1 | 1e-107 | MYB_related family protein |
Publications ? help Back to Top | |||
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