PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02423_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 625aa MW: 67468.9 Da PI: 6.3922 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 359.7 | 4.2e-110 | 257 | 625 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 ++++l++A a+s+g++ ++++L+rl + a+++g++ qRl +++ AL++r+++ + + p+ e s+e++ +++l+ Cotton_A_02423_BGI-A2_v1.0 257 KQTILDAAAAISEGKNDVVNEILTRLAQAANSKGSSEQRLMECMLSALKSRVNS----VENPPPVAEL---FSKEHAVSTQLL 332 57899************************************************9....4443344433...49999******* PP GRAS 85 sevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetge 163 +++sP++k+++l+aNqaIl+a+ + ++ H++Dfd + G+Q+++Ll+aL++R +g+p +++iT++++ +g e+l+++g+ Cotton_A_02423_BGI-A2_v1.0 333 YDLSPCFKLGFLAANQAILDATLDKpscNKFHVVDFDFGSGGQYMNLLHALSERGNGKPaTVKITAIAD--NGGDERLKTVGD 413 *********************9988778999***********************977666*********..77********** PP GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqea 246 rL++fAe+ gv+++fnv+ +l+dl+ ++L ++++E laVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+ Cotton_A_02423_BGI-A2_v1.0 414 RLSQFAESYGVSLKFNVISGLKLSDLSRDSLGIEQDEPLAVNFAFKLYRMPDESVSVENPRDELLRRVKGLAPRVVTLVEQEM 496 *****************9888************************************************************** PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329 ++n+++F+ r+ ea+ yy alfds+e+++ r++ er+k+E+ l r+i n vaceg++r+er+e ++kWr+r+++aGF+ pl Cotton_A_02423_BGI-A2_v1.0 497 NTNTAPFALRVGEACGYYGALFDSVESTVLRDNPERAKLEEG-LLRKIANSVACEGRDRVERCEVFGKWRARMSMAGFELKPL 578 ******************************************.889************************************* PP GRAS 330 sekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 s+++a+++++ l+ + + g++v+ee+g + +gW +r+L+++SaWr Cotton_A_02423_BGI-A2_v1.0 579 SQTVAETMRAKLNSGNrvNPGFTVKEENGGVSFGWLGRTLTVASAWR 625 **********9998777789**************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.007 | 230 | 603 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-107 | 257 | 625 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MASGFSGGGP DFYGGLAGRS VGNTGTINNN QTTAPYRTQV PGMFMDTTSQ IVNRATPGFI 60 GKRTLADFQT QQALNNNPGR LFLRSVKPRT YQHTSPISPL SPIDLPSNLS PDVMSNFSSP 120 SSCMSQRYGL PLLQQLRSQQ VPLGINTGAT IQAVNTGLSG GPYMNPVSTR VVQPHDPEKK 180 MMNQLQDLEK QLLDDDNDEG DAVSVITNTN SEWSETIQNL IGSTGSPNNP IAPSPTSTTS 240 SCSSTSSTAS PASPCSKQTI LDAAAAISEG KNDVVNEILT RLAQAANSKG SSEQRLMECM 300 LSALKSRVNS VENPPPVAEL FSKEHAVSTQ LLYDLSPCFK LGFLAANQAI LDATLDKPSC 360 NKFHVVDFDF GSGGQYMNLL HALSERGNGK PATVKITAIA DNGGDERLKT VGDRLSQFAE 420 SYGVSLKFNV ISGLKLSDLS RDSLGIEQDE PLAVNFAFKL YRMPDESVSV ENPRDELLRR 480 VKGLAPRVVT LVEQEMNTNT APFALRVGEA CGYYGALFDS VESTVLRDNP ERAKLEEGLL 540 RKIANSVACE GRDRVERCEV FGKWRARMSM AGFELKPLSQ TVAETMRAKL NSGNRVNPGF 600 TVKEENGGVS FGWLGRTLTV ASAWR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-42 | 255 | 625 | 11 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017611282.1 | 0.0 | PREDICTED: scarecrow-like protein 8 | ||||
Swissprot | Q9FYR7 | 0.0 | SCL8_ARATH; Scarecrow-like protein 8 | ||||
TrEMBL | A0A2P5W533 | 0.0 | A0A2P5W533_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.007G012300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4350 | 28 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 0.0 | SCARECROW-like 8 |