PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02399_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 329aa    MW: 36321.1 Da    PI: 6.1659
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02399_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.41.6e-29129190159
                                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                 ldDg++WrKYGqK++ gs+fpr+YYrCt++   gC ++k+v+rs++dp++++itY g+H+++
  Cotton_A_02399_BGI-A2_v1.0 129 LDDGFSWRKYGQKDILGSRFPRGYYRCTHRninGCLATKQVQRSDDDPTIFDITYVGTHTCR 190
                                 59***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28124191IPR003657WRKY domain
PROSITE profilePS5081122.561124187IPR003657WRKY domain
SuperFamilySSF1182905.49E-26128190IPR003657WRKY domain
SMARTSM007741.7E-39129191IPR003657WRKY domain
PfamPF031062.0E-27130190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGEWEQRSLV SELTQGREVA RQLQAHLNGA SSLSYDIETR EVLVQKIEAS YEKALSILNC  60
NVNTSSASAV VPLTPVIRMP ESPNSRCGSP PSEDSDRGFR DSDASKKRKA PRWTQQVRVT  120
PGTALEGTLD DGFSWRKYGQ KDILGSRFPR GYYRCTHRNI NGCLATKQVQ RSDDDPTIFD  180
ITYVGTHTCR NVTSHLMSEK NQEQGPSASL MAAVEPQSSS SSQDLLLNFQ KGLKVKTQDL  240
EDQTYASLIP YTSSTSNVVF SWPSVIDNNR NFVSPATSGT NFDFGTCDDQ IIQASVAASV  300
TSSPTVGLDH FHQLDGNFTF DNNGFFRHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-21129190869OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0311090.0KF031109.1 Gossypium hirsutum WRKY transcription factor 87 (WRKY87) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610455.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLA0A2P5VU140.0A0A2P5VU14_GOSBA; Uncharacterized protein
STRINGGorai.007G014600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-56WRKY family protein