PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02375_BGI-A2_v1.0 | ||||||||
Common Name | F383_00477 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 216aa MW: 25413.2 Da PI: 6.0515 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.4e-19 | 36 | 89 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ft++q++ Le+ Fe++ ++ +++ + A++lgL+ rqV++WFqNrRa+ k Cotton_A_02375_BGI-A2_v1.0 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLK 89 5679************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.1 | 4.7e-38 | 36 | 127 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +krr++++q++lLE+ Fe+e+kLep++K ++areLglqprqv +WFqnrRAR k+kq+Ekdy +L+++yd+l+++ e+L++e+ Cotton_A_02375_BGI-A2_v1.0 36 NKRRFTDDQIRLLESIFESETKLEPKKKLQVARELGLQPRQVSIWFQNRRARLKSKQMEKDYVTLRDNYDKLVSRFEMLKEEK 118 79********************************************************************************* PP HD-ZIP_I/II 85 eeLreelke 93 + L +++++ Cotton_A_02375_BGI-A2_v1.0 119 QCLISQMEK 127 ***999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.3E-18 | 19 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.41 | 31 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-17 | 34 | 95 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.9E-16 | 36 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-14 | 37 | 92 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-18 | 37 | 97 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.6E-5 | 62 | 71 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 66 | 89 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.6E-5 | 71 | 87 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-13 | 91 | 132 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
METRDHHHPS SNELILQQYS QAPPPGKNNS NNSSSNKRRF TDDQIRLLES IFESETKLEP 60 KKKLQVAREL GLQPRQVSIW FQNRRARLKS KQMEKDYVTL RDNYDKLVSR FEMLKEEKQC 120 LISQMEKLSE MLAESETNGV NKVSKVGSTE HEAEPGSSFK QEDDGVLGLE TQKGHREIED 180 AVKHGDEFLG MDEYRDYDDQ FDHLCSRWHH WLNFWT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 91 | RRARLKSKQ |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX584309 | 1e-130 | JX584309.1 Gossypium hirsutum clone NBRI_GE17582 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017610470.1 | 1e-161 | PREDICTED: homeobox-leucine zipper protein ATHB-7-like | ||||
TrEMBL | A0A0B0PQ42 | 1e-160 | A0A0B0PQ42_GOSAR; Homeobox-leucine zipper ATHB-7-like protein | ||||
STRING | Gorai.007G016800.1 | 1e-144 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17513 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 2e-42 | homeobox 7 |