PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02366_BGI-A2_v1.0
Common NameF383_30671
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 533aa    MW: 59329 Da    PI: 5.8611
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02366_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.33e-5391371128
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksg 81 
                                 lp G+rF+Ptdeel+++yL++kv+gk+ ++  vi+evd++k+ePwdLp+  +vka++ ew+fF++ d+ky++g+r nrat++g
  Cotton_A_02366_BGI-A2_v1.0   9 LPIGIRFRPTDEELIDFYLRAKVNGKRKDEIGVIREVDVCKCEPWDLPHlsAVKARDPEWFFFCPLDRKYPNGNRLNRATEAG 91 
                                 699************************999899***************4448888999************************* PP

                         NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 yWkatgkd++++s ++ l+g+kktLvfy+grapkg++t+Wvmheyr 
  Cotton_A_02366_BGI-A2_v1.0  92 YWKATGKDRKIKS-GSCLIGMKKTLVFYTGRAPKGKRTNWVMHEYRT 137
                                 *************.99*****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.02E-604160IPR003441NAC domain
PROSITE profilePS5100556.5789160IPR003441NAC domain
PfamPF023656.1E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MAVISLNSLP IGIRFRPTDE ELIDFYLRAK VNGKRKDEIG VIREVDVCKC EPWDLPHLSA  60
VKARDPEWFF FCPLDRKYPN GNRLNRATEA GYWKATGKDR KIKSGSCLIG MKKTLVFYTG  120
RAPKGKRTNW VMHEYRTTLD ELDGTKPGQN PFVICRLFKK QDETIEDING DDVDPGASSH  180
TEEVQSEFDG PSVEGGAGKV PDGGAGKVPD ETRPVGLCNE AVAPIFDCNN DGFNACELEE  240
TAPAQVDLLG EALFQICDPM MEPLDWKLFS PLHSQIEAEG APWMFDHVGN SFGGVKFEHG  300
TNENDAEFMN SILNNSDDYY SDDSSSRRNS VIETETPKSM AFGTNGGLYC KPDAEPARVL  360
PGTGTANGGA FYNVLNSNGE PSNHVNTACN VDTAPTIRIR SRAHRIQPDT ENFDTQGIAS  420
RRCKLVVHSP RFEEKEHDSK PILTKGVKAM EEYISVGNDA ARRTMDEPQI FETSKRDVLR  480
SKSKIPVSEA VSYRCLKRFS ARRQHKPFSV IMFRVVAVML ILFVALVSTL NVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-41816314171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472260.0KC847226.1 Gossypium hirsutum NAC domain protein NAC49 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017607809.10.0PREDICTED: NAC domain-containing protein 91-like
TrEMBLA0A0B0N0D70.0A0A0B0N0D7_GOSAR; NAC domain-containing 78-like protein
STRINGGorai.007G017500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24162873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.25e-90TCV-interacting protein