PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02285_BGI-A2_v1.0

Common Name

F383_23510

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 634aa MW: 69188.1 Da PI: 7.5909

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02285_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.3e-09	365	402	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Cotton_A_02285_BGI-A2_v1.0 365 FEHflHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVR 402 554459******************************88 PP
2	BELL	127.3	5.7e-41	228	299	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eVd+rY+qy++q+q+vissFe++ag+gsak YtslAlk+iS++FrcLkdai++qi Cotton_A_02285_BGI-A2_v1.0 228 ERQEIQMKKAKLISMLDEVDQRYRQYHHQMQIVISSFEQAAGIGSAKTYTSLALKTISKQFRCLKDAITGQI 299 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.7E-66	154	297	IPR006563	POX domain
Pfam	PF07526	7.8E-50	159	296	IPR006563	POX domain
PROSITE profile	PS50071	12.147	343	406	IPR001356	Homeobox domain
SMART	SM00389	1.8E-9	346	410	IPR001356	Homeobox domain
CDD	cd00086	2.83E-12	346	407	No hit	No description
SuperFamily	SSF46689	6.84E-17	347	412	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-28	349	412	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	363	402	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 634 aa Download sequence Send to blast
MATYFHGNPE IQAPDGLQTL VLMNPAYVQY SDTTPPPQPN NLVFHAPPPP HTQQFVGVPL 60 TATSTANQDP PSHEISPLHG LVQRVHYNLY NPIDPSGAAR ETPRAQQGLS LSLSSQQQQH 120 HHGYGSHAQA VSGEDMRVSG GSGSSGSGVT NGVSGVQSML LSSKFLKAAQ ELLDEVVNVN 180 NTGITKNELA KKGRGGGDNS NSSKAVGESA AAAGDADGKQ GPELTTAERQ EIQMKKAKLI 240 SMLDEVDQRY RQYHHQMQIV ISSFEQAAGI GSAKTYTSLA LKTISKQFRC LKDAITGQIR 300 AANKSLGEED CLGGSKIEGS RLKLVDHHLR QQRALQQLGM IQHNAWRPQR GLPERSVSVL 360 RAWLFEHFLH PYPKDSDKVM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEIKEQE 420 QNGSEKKTSK SHNNEDSTSK STAPDKTSTE NKQDNNIPNQ NGCSSMSVSM GSASPLIGNQ 480 SGFSFIGSSE LEGITQGSPK KPRTNNEVTM KFDKDGYTFM GGTTNNDFMG GFGQYPIGEI 540 TRFDTEQFTP RFSGNGVSLT LGLPHCENLS LSGTPHQTFL PNQAMQMGRR VDIGEPNEFG 600 SINPSTPHSS AAYDNINIQN RKRFAAQLLP DFVA

Sequence ? help Back to Top

Protein Sequence Length: 634 aa Download sequence Send to blast

MATYFHGNPE IQAPDGLQTL VLMNPAYVQY SDTTPPPQPN NLVFHAPPPP HTQQFVGVPL  60
TATSTANQDP PSHEISPLHG LVQRVHYNLY NPIDPSGAAR ETPRAQQGLS LSLSSQQQQH  120
HHGYGSHAQA VSGEDMRVSG GSGSSGSGVT NGVSGVQSML LSSKFLKAAQ ELLDEVVNVN  180
NTGITKNELA KKGRGGGDNS NSSKAVGESA AAAGDADGKQ GPELTTAERQ EIQMKKAKLI  240
SMLDEVDQRY RQYHHQMQIV ISSFEQAAGI GSAKTYTSLA LKTISKQFRC LKDAITGQIR  300
AANKSLGEED CLGGSKIEGS RLKLVDHHLR QQRALQQLGM IQHNAWRPQR GLPERSVSVL  360
RAWLFEHFLH PYPKDSDKVM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEEIKEQE  420
QNGSEKKTSK SHNNEDSTSK STAPDKTSTE NKQDNNIPNQ NGCSSMSVSM GSASPLIGNQ  480
SGFSFIGSSE LEGITQGSPK KPRTNNEVTM KFDKDGYTFM GGTTNNDFMG GFGQYPIGEI  540
TRFDTEQFTP RFSGNGVSLT LGLPHCENLS LSGTPHQTFL PNQAMQMGRR VDIGEPNEFG  600
SINPSTPHSS AAYDNINIQN RKRFAAQLLP DFVA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	8e-16	352	410	5	63	Homeobox protein Meis2
3k2a_B	8e-16	352	410	5	63	Homeobox protein Meis2
4xrs_A	8e-16	352	409	1	58	Homeobox protein Meis1
4xrs_B	8e-16	352	409	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017620234.1	0.0	PREDICTED: BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A0B0MQX8	0.0	A0A0B0MQX8_GOSAR; BEL1-like homeodomain protein 1
STRING	Gorai.002G234900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5008	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-170	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]