PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02191_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 331aa MW: 37730.4 Da PI: 5.0212

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02191_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.9	6.4e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat+ g Cotton_A_02191_BGI-A2_v1.0 6 LPPGFRFHPTDEELVAYYLDRKISGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRGG 87 79**************************.99**********96435566888********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd++v + ++++vg+kktLv+y+grap+g +t+Wvmheyrl Cotton_A_02191_BGI-A2_v1.0 88 YWKATGKDRAVQT-SKAVVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 ********9.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-64	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.737	6	157	IPR003441	NAC domain
Pfam	PF02365	4.1E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAPMTLPPGF RFHPTDEELV AYYLDRKISG RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DKKYPNGSRT NRATRGGYWK ATGKDRAVQT SKAVVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLLHSASPT APSSLKDSYS LCRIFKKNIQ IPKTKGAAVE NNQSFGDEIS 180 RGREAEVEDE NFNTSSSDVT QGTPNETGMA DEYQPPFTSD EANSSANLSS LGPDFSSDLF 240 QIIHLIHMCI MNEMQIPSYT NLHYQAPYPP LELEDFPQIN IISETKASKA EIIDEYMMYD 300 KCKDYMNGSL EEIFSLCASQ DNSMPPLSMH D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-58	1	158	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-58	1	158	15	169	NAC domain-containing protein 19
3swm_B	7e-58	1	158	15	169	NAC domain-containing protein 19
3swm_C	7e-58	1	158	15	169	NAC domain-containing protein 19
3swm_D	7e-58	1	158	15	169	NAC domain-containing protein 19
3swp_A	7e-58	1	158	15	169	NAC domain-containing protein 19
3swp_B	7e-58	1	158	15	169	NAC domain-containing protein 19
3swp_C	7e-58	1	158	15	169	NAC domain-containing protein 19
3swp_D	7e-58	1	158	15	169	NAC domain-containing protein 19
4dul_A	6e-58	1	158	12	166	NAC domain-containing protein 19
4dul_B	6e-58	1	158	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847198	0.0	KC847198.1 Gossypium hirsutum NAC domain protein NAC21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017619907.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	4e-85	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A1U8IE28	0.0	A0A1U8IE28_GOSHI; NAC domain-containing protein 86-like
STRING	Gorai.013G146300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-112	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]