PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_02119_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YB
Protein Properties Length: 234aa    MW: 25780.2 Da    PI: 6.512
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_02119_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB184.39.4e-5824119297
                       NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                                 +eqdrflPianvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcq+ekrktingddllwa++tlGfedyveplk
  Cotton_A_02119_BGI-A2_v1.0  24 KEQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLK 106
                                 79********************************************************************************* PP

                       NF-YB  85 vylkkyrelegek 97 
                                 vyl+++re+egek
  Cotton_A_02119_BGI-A2_v1.0 107 VYLQRFREMEGEK 119
                                 ***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-5420127IPR009072Histone-fold
SuperFamilySSF471131.01E-4026127IPR009072Histone-fold
PfamPF008086.4E-282993IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.5E-205775No hitNo description
PROSITE patternPS0068506076IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.5E-207694No hitNo description
PRINTSPR006151.5E-2095113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVDSDTESGG GQNNASNADL SSPKEQDRFL PIANVSRIMK KALPANAKIS KEAKETVQEC  60
VSEFISFITG EASDKCQKEK RKTINGDDLL WAMTTLGFED YVEPLKVYLQ RFREMEGEKT  120
AVARDKDAPL AGGVGAAAAA GSSGMYGMMV HQQHQGHVYG TGGFHQMGRG PRFGILGWAG  180
DKALLIYYWD TCTVVIACMF EEKVVSGFTF HTLDLRFGSS LYLQHWSDVK LFKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B7e-4724114292Transcription factor HapC (Eurofung)
4g92_B7e-4724114292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5276491e-105HQ527649.1 Gossypium herbaceum clone NBRI_E_3586 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016675931.11e-126PREDICTED: nuclear transcription factor Y subunit B-2-like
RefseqXP_017617426.11e-126PREDICTED: nuclear transcription factor Y subunit B-2-like
SwissprotQ75IZ75e-68NFYB8_ORYSJ; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1U8ICJ41e-125A0A1U8ICJ4_GOSHI; nuclear transcription factor Y subunit B-2-like
STRINGGorai.013G153100.11e-124(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.13e-69nuclear factor Y, subunit B3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]