PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_02095_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Nin-like

Protein Properties

Length: 942aa MW: 103746 Da PI: 7.0381

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_02095_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.5	2e-26	607	672	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLg...............vclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++g vc+T+LKriCRq+GI RWP+Rkik++ Cotton_A_02095_BGI-A2_v1.0 607 EKTISLQVLRQYFAGSLKDAAKSIGgpsslgvayrvyciaVCPTTLKRICRQHGITRWPSRKIKKV 672 799*************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.3	596	692	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-22	609	672	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.42E-24	840	931	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.9E-24	844	925	No hit	No description
SMART	SM00666	2.0E-28	845	928	IPR000270	PB1 domain
PROSITE profile	PS51745	28.339	845	928	IPR000270	PB1 domain
Pfam	PF00564	9.8E-20	846	927	IPR000270	PB1 domain
CDD	cd06407	1.03E-43	846	927	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 942 aa Download sequence Send to blast
MDLDFMDQLL VEGCWLETSD GFNFMQPTPS TSTPSPHCFP VSGSNTFPFT INPHQMHQGE 60 TDMQFAPSQT DNLSKTRSQN WGGVGNASSL SQTGSFIVEG TEMGSRWWIG PKAESGSSLS 120 VKERLMQAIG YLKESTKDRD VLIQIWVPVT REGKHVLTTE GQPYSVNTNS KSLKIFRDVS 180 KSYNFPAEED SNKSVGLPGR VFLGKLPEWT PDVRFFRSEE YPRVSFALKY NVGGSLALPV 240 FERASGTCLG VVEVVTTAQK INYHPELEYV CKALEAVDLR TSHNFSPPNV EACNELYQAA 300 LPEIAEVLRS VCKIYKLPLA LTWAPCLSQG KSGCRHSDEN YYNCVSTVDA ACFVADDKFL 360 GFLEACSEHH LFKGQGIVGR AFTTDKQCFA TDITAFSKTN YPLSHHARMF KLRGALAIPL 420 QSIFTGLVEF VLELFFPKDC HESEAQQQML NSLSSFMQQA CQSLHVVMDK ELEEEVILPV 480 KEAVVASDGI SDKEEIKFKL SSPNENSPEE SSWIAHMMEA QQKGKGVYVS WEYQKEEPKE 540 EFKMTTSWEE TRQELFNKQV LSDFGLLHQN AGSIGSLEGG GGDSSSSGGR HILARKKAGK 600 KRRTKMEKTI SLQVLRQYFA GSLKDAAKSI GGPSSLGVAY RVYCIAVCPT TLKRICRQHG 660 ITRWPSRKIK KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNF SGKVPSSSKI 720 SNQSKPSEPQ IQSGVLSQGA AAAAPKSPSS SCSQSSGSST CCSTGAKQRS TSISALCSTD 780 GLTVENPEGA LKRALSDADL QALNQEEPKL LARSQSHKTF GELPSFETKP PLPKSGGHKL 840 RTAGAIKVKV MYREDKVRLS LQPSWGFKDL QQEIGRRFNI EDVSRIDLKY LDDDEEWVLL 900 TCDADLEECI DIYKSSQSKT IKISLEQASH PNLGSSFGSS AP

Sequence ? help Back to Top

Protein Sequence Length: 942 aa Download sequence Send to blast

MDLDFMDQLL VEGCWLETSD GFNFMQPTPS TSTPSPHCFP VSGSNTFPFT INPHQMHQGE  60
TDMQFAPSQT DNLSKTRSQN WGGVGNASSL SQTGSFIVEG TEMGSRWWIG PKAESGSSLS  120
VKERLMQAIG YLKESTKDRD VLIQIWVPVT REGKHVLTTE GQPYSVNTNS KSLKIFRDVS  180
KSYNFPAEED SNKSVGLPGR VFLGKLPEWT PDVRFFRSEE YPRVSFALKY NVGGSLALPV  240
FERASGTCLG VVEVVTTAQK INYHPELEYV CKALEAVDLR TSHNFSPPNV EACNELYQAA  300
LPEIAEVLRS VCKIYKLPLA LTWAPCLSQG KSGCRHSDEN YYNCVSTVDA ACFVADDKFL  360
GFLEACSEHH LFKGQGIVGR AFTTDKQCFA TDITAFSKTN YPLSHHARMF KLRGALAIPL  420
QSIFTGLVEF VLELFFPKDC HESEAQQQML NSLSSFMQQA CQSLHVVMDK ELEEEVILPV  480
KEAVVASDGI SDKEEIKFKL SSPNENSPEE SSWIAHMMEA QQKGKGVYVS WEYQKEEPKE  540
EFKMTTSWEE TRQELFNKQV LSDFGLLHQN AGSIGSLEGG GGDSSSSGGR HILARKKAGK  600
KRRTKMEKTI SLQVLRQYFA GSLKDAAKSI GGPSSLGVAY RVYCIAVCPT TLKRICRQHG  660
ITRWPSRKIK KVGHSLRKLQ LVIDSVQGAE GAIQIGSFYS SFPELSSPNF SGKVPSSSKI  720
SNQSKPSEPQ IQSGVLSQGA AAAAPKSPSS SCSQSSGSST CCSTGAKQRS TSISALCSTD  780
GLTVENPEGA LKRALSDADL QALNQEEPKL LARSQSHKTF GELPSFETKP PLPKSGGHKL  840
RTAGAIKVKV MYREDKVRLS LQPSWGFKDL QQEIGRRFNI EDVSRIDLKY LDDDEEWVLL  900
TCDADLEECI DIYKSSQSKT IKISLEQASH PNLGSSFGSS AP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	599	604	KKRRTK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012436443.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_012436444.1	0.0	PREDICTED: protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A0D2PNI4	0.0	A0A0D2PNI4_GOSRA; Uncharacterized protein
STRING	Gorai.008G041100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein