PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01966_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 207aa    MW: 23313.3 Da    PI: 6.9254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01966_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.2e-1899149255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +g+++AeIrdp+     +r++lg+f+t  +Aaka++ a+ k++g
  Cotton_A_01966_BGI-A2_v1.0  99 HYRGVRRRP-WGKFAAEIRDPTRK--GRRVWLGTFDTDVDAAKAYDCAAFKIRG 149
                                 7********.**********8542..4**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-3198158IPR001471AP2/ERF domain
PfamPF008475.2E-1399149IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2299159IPR016177DNA-binding domain
SMARTSM003801.1E-3599163IPR001471AP2/ERF domain
PROSITE profilePS5103224.28999157IPR001471AP2/ERF domain
PRINTSPR003674.3E-13100111IPR001471AP2/ERF domain
CDDcd000185.95E-24107157No hitNo description
PRINTSPR003674.3E-13139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTSVEESTTL EFIHQHLLGD FTSADAFISS LDFGLSQLQN YQVPELYQPH SPVSDPNCRI  60
PEIFGYDVKP EVVELASPSV FISGSKMEQK VLVCEERRHY RGVRRRPWGK FAAEIRDPTR  120
KGRRVWLGTF DTDVDAAKAY DCAAFKIRGQ KAILNFPLEA GQATPPATTC RKRGKEKRNK  180
SPESDVMSQV SSELASAVVK EEEDKPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2798158161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2798158464ATERF1
3gcc_A1e-2798158464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636351.11e-154PREDICTED: ethylene-responsive transcription factor ERF107-like
SwissprotQ9LY055e-50EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A1U8L6921e-153A0A1U8L692_GOSHI; ethylene-responsive transcription factor ERF107-like
TrEMBLA0A2P5Y4R91e-153A0A2P5Y4R9_GOSBA; Uncharacterized protein
STRINGGorai.007G046100.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32292766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.18e-42ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]