PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01957_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 218aa    MW: 24244.9 Da    PI: 9.9224
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01957_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-204594255
                         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f tae Aa a+++a+++++g
  Cotton_A_01957_BGI-A2_v1.0 45 HYRGVRQRP-WGKWAAEIRDP---N-KaARVWLGTFATAEAAAIAYDEAALRFKG 94
                                69*******.**********9...3.35***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-3245103IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2245103IPR016177DNA-binding domain
CDDcd000189.86E-2045103No hitNo description
PROSITE profilePS5103224.40845102IPR001471AP2/ERF domain
PfamPF008477.5E-144594IPR001471AP2/ERF domain
SMARTSM003808.8E-3845108IPR001471AP2/ERF domain
PRINTSPR003674.6E-114657IPR001471AP2/ERF domain
PRINTSPR003674.6E-116884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MIQALTHVIG NDNDNNNPLL VQLHHHNQYQ YQSQHQPQGN VRRIHYRGVR QRPWGKWAAE  60
IRDPNKAARV WLGTFATAEA AAIAYDEAAL RFKGSKAKLN FPERVQRSSG SGYLTISHVV  120
ERVPPPLPPR HSQPTFPNIS DDQLLSGGSN GGEAVSRPAF TSQYPTTLSS SSSSTTLTSK  180
LQQEDLGGFL LKNIGGSSPS SDPPKNKRQC YDYYYSRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2645105263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636532.11e-162PREDICTED: ethylene-responsive transcription factor ERF114-like
RefseqXP_017636533.11e-162PREDICTED: ethylene-responsive transcription factor ERF114-like
RefseqXP_017636535.11e-162PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH545e-47EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A2P5Y4S71e-129A0A2P5Y4S7_GOSBA; Uncharacterized protein
STRINGGorai.007G045100.11e-123(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2431434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]