PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01917_BGI-A2_v1.0
Common NameF383_04055
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 484aa    MW: 52899.1 Da    PI: 4.8393
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01917_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.5e-12141163426
                                 ---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                                 e+C ++++tG Ck+G++CkF+H+
  Cotton_A_01917_BGI-A2_v1.0 141 ENCAYYMKTGLCKFGSNCKFNHP 163
                                 89********************9 PP
2zf-CCCH30.56.1e-10186211227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++ +C++++rtG Ck+G  C+++H++
  Cotton_A_01917_BGI-A2_v1.0 186 GQTECKYYLRTGGCKFGKACRYNHSR 211
                                 6789********************95 PP
3zf-CCCH39.41e-12232256226
                                 -S---SGGGGTS--TTTTT-SS-SS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                 ++++C++++r+G CkyG++C+F+H+
  Cotton_A_01917_BGI-A2_v1.0 232 GEKECPYYMRNGSCKYGANCRFNHP 256
                                 6789********************9 PP
4zf-CCCH26.89.1e-09370396127
                                 --S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                 +++++C++f++tG Ck+ ++Ck++H++
  Cotton_A_01917_BGI-A2_v1.0 370 PGQPECSYFLKTGDCKFKSNCKYHHPK 396
                                 5789*********************96 PP
5zf-CCCH33.47.6e-11417442227
                                 -S---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                 ++++C +++r+G+Ck+G+ CkF H++
  Cotton_A_01917_BGI-A2_v1.0 417 DQSICLHYSRYGICKFGPACKFDHSM 442
                                 6789********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.126137165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-6137165IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5137164IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10141163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5143162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.652184212IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5184211IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-8186211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5187212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4190211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004230258IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-6230257IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10232256IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6232258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5236255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333369397IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4369396IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6371396IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5373398IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.957415443IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-4415442IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5416443IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8417441IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4419442IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSQSEEAPIS DTTAPADSAL NTLGHRSPDS DPTPNPDASP TPSDLNRAAE ETGHDESNLE  60
QQLQDLDLKE EEEEEVAAAA AAAETKDDGE RKGDNDYNEA DAGAAGDKED EEEKNENEND  120
GENGKRFEGV RSHYPVRPDA ENCAYYMKTG LCKFGSNCKF NHPVRRKNQG VQEKLKENDE  180
STEKPGQTEC KYYLRTGGCK FGKACRYNHS RAKSSTDPIL ELNFLGLPIR QGEKECPYYM  240
RNGSCKYGAN CRFNHPDPTT TGACDPPAAY GNGGSVSSQA ASQVNMASWS SPRALNETAT  300
ATFMPIMFSP TPGVPPPNPE WNGYQATIYP PPERILHPTP AYVMSNPSTE TTVYTQNQPQ  360
MVVDEFPVRP GQPECSYFLK TGDCKFKSNC KYHHPKNRFA KPAPCALSDK GLPLRPDQSI  420
CLHYSRYGIC KFGPACKFDH SMQAAPSTAV SELEQPPSFS HSAPLEQTGI AGSNGTDTAV  480
QQPV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638249.10.0PREDICTED: zinc finger CCCH domain-containing protein 67-like
SwissprotQ9STM41e-141C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A0B0NF000.0A0A0B0NF00_GOSAR; Uncharacterized protein
STRINGGorai.007G041600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-138C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]