PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01907_BGI-A2_v1.0
Common NameF383_00633
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 544aa    MW: 59589.3 Da    PI: 7.6367
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01907_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.6e-082602921955
                                 HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 +f+ Lr+++P++    ++K +Ka+ L +++eYI+ Lq
  Cotton_A_01907_BGI-A2_v1.0 260 RFQMLRDIIPNS----DQKRDKASFLLEVIEYIQFLQ 292
                                 699********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.524241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-13260306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.37E-7260296No hitNo description
PfamPF000103.5E-5260292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-9260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MELPQSRPFG AEGRKPTHDF LSLYSHSSVQ QDPRPPSQGG YLKTRDFLQL EQQGNPSAKK  60
EISIEVATVE MPTPPSVEHI LPGGIGTYSI SHVSYFNPRV PKSEGAVFTV AEGSSTERND  120
ENSNCSSYTG SGFTLWEETA GKKGKTGKEN AGETPFVRDA AGTVGHWATS SLEKGAQSST  180
NNHPKSYSCL SSSQPSSKQK RQSFMEMIKS AKGSSHDDDF EEDEDFVLKK ESSTTTHNIG  240
ELRVKVDGKR VPDQKANTPR FQMLRDIIPN SDQKRDKASF LLEVIEYIQF LQERVHKYEG  300
TYQGWSHVPS KLIPWRSNQR PTENYADQSR AINGVSAPSV VFPTKLNDGN INITPTIRES  360
AENPIEPNKS SATTFRAMDL TPGMMNKTMP FPVSLQPNFF NTAQNTVPAT QIPPRLPSDA  420
ENNASQPQPV LCHTGSCTAN GALPSEKLKE QELTIEGGKI NISSLYSQRL LNTLTQALQT  480
SGLDLSQASI SVQIELGKQS SNRPTAPTST LKDTTAVPST NQGKTRPRVG CGEDSDQPLK  540
KLKT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017638269.10.0PREDICTED: transcription factor BIM1
RefseqXP_017638270.10.0PREDICTED: transcription factor BIM1
RefseqXP_017638271.10.0PREDICTED: transcription factor BIM1
TrEMBLA0A0B0PEH70.0A0A0B0PEH7_GOSAR; Transcription factor BIM1-like protein
STRINGGorai.007G040600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.44e-94bHLH family protein