PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01813_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 340aa    MW: 39456.3 Da    PI: 4.9166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01813_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.22e-46651902128
                         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                                 ppG+rF P deelv +yLkkkv + +l+  + i ev++y+++P++L     + +ekewyfF++rdkky++g+r+nra+  gyW
  Cotton_A_01813_BGI-A2_v1.0  65 PPGYRFCPLDEELVLYYLKKKVLNLPLPQ-NRIVEVNLYQYNPERLAeLYKQYGEKEWYFFTPRDKKYRNGTRPNRAAMGGYW 146
                                 9*************************999.77**************8334455899*************************** PP

                         NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                 katg d+ev   k++ vg +k Lvfykgr pkg kt+W+mheyr+
  Cotton_A_01813_BGI-A2_v1.0 147 KATGADREVRF-KDRIVGYRKALVFYKGRPPKGDKTSWIMHEYRV 190
                                 **********9.8899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-5463219IPR003441NAC domain
PROSITE profilePS5100554.59764219IPR003441NAC domain
PfamPF023651.5E-2465190IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEVEPKRELC DTNQTPEKTP PLSLHHASSS DALGIVEAPE NEEPIVNGTN NKDKIDDDGY  60
LDSFPPGYRF CPLDEELVLY YLKKKVLNLP LPQNRIVEVN LYQYNPERLA ELYKQYGEKE  120
WYFFTPRDKK YRNGTRPNRA AMGGYWKATG ADREVRFKDR IVGYRKALVF YKGRPPKGDK  180
TSWIMHEYRV NDPPPLCSKK EGYTDMRLDD YVLCRIYKKV DKSGRTQTKT EDGLALTQKQ  240
ERDEMMGSED TMNYLSTMGM GMGGNFMNQA FPEFQYIFND QFPSSFPTKY LNDRLEEDVW  300
SFDFPPQLDV SVEGLINVDN VFSPDTANKN STNSEMNTRD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-506321916165NO APICAL MERISTEM PROTEIN
1ut4_B2e-506321916165NO APICAL MERISTEM PROTEIN
1ut7_A2e-506321916165NO APICAL MERISTEM PROTEIN
1ut7_B2e-506321916165NO APICAL MERISTEM PROTEIN
3swm_A3e-506321919168NAC domain-containing protein 19
3swm_B3e-506321919168NAC domain-containing protein 19
3swm_C3e-506321919168NAC domain-containing protein 19
3swm_D3e-506321919168NAC domain-containing protein 19
3swp_A3e-506321919168NAC domain-containing protein 19
3swp_B3e-506321919168NAC domain-containing protein 19
3swp_C3e-506321919168NAC domain-containing protein 19
3swp_D3e-506321919168NAC domain-containing protein 19
4dul_A2e-506321916165NAC domain-containing protein 19
4dul_B2e-506321916165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with male fertility. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472530.0KC847253.1 Gossypium hirsutum NAC domain protein NAC76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610555.10.0PREDICTED: NAC transcription factor ONAC010-like
SwissprotA2YMR09e-63NAC10_ORYSI; NAC transcription factor ONAC010
TrEMBLA0A1U8I3J00.0A0A1U8I3J0_GOSHI; NAC transcription factor ONAC010-like
STRINGGorai.006G127700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1887468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-51NAC-like, activated by AP3/PI