PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01790_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | GRAS | ||||||||
Protein Properties | Length: 472aa MW: 52956.9 Da PI: 6.2024 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 470.5 | 9.1e-144 | 47 | 469 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 l++lLl+cA++v++g+le+a+ +L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ + see+ ++kl Cotton_A_01790_BGI-A2_v1.0 47 LIHLLLTCANHVANGSLENANIALEQISQLASPDGDTMQRMAAYFTEALADRILKAWPGLHKALNSTRIT--LLSEEILVRKL 127 689*************************************************************999987..7********** PP GRAS 84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166 f+e++P+lk++++++NqaI ea+ege++vHiiD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++ +ke l ++++r Cotton_A_01790_BGI-A2_v1.0 128 FFELFPFLKVAFVLTNQAIIEAMEGEKMVHIIDLNAAEPAQWVALIQALSARPEGPPHLRITGIHQ----QKEVLDQMAHRVI 206 ******************************************************************....9************ PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll................................... 214 + Ae+l++pf+fn+ v+ +le+l++++Lrvk+gEala+++vlqlh++l Cotton_A_01790_BGI-A2_v1.0 207 EEAEKLDIPFQFNP-VVCKLENLDVDKLRVKTGEALAISSVLQLHSFLtsddellrkksplgsknlngihlqralqmnqstlg 288 **************.6888**************************************************************** PP GRAS 215 ......................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 ++s+ + + d++L+++++lsPk++vv+eq+++hn+++++er+le+l+ y+alfd+ e+++ Cotton_A_01790_BGI-A2_v1.0 289 ellekdmvngyspspdsassspQSSTGSV-KVDSFLNALWGLSPKLMVVTEQDSNHNGSTLMERLLESLHSYAALFDCSESTV 370 *****************987753333333.47*************************************************** PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358 +r+s er kvE++l+g+ei+n++acegaer+erhe+lekW +rl+ aGF++vpls++ + a++ll+ ++ dgy+++ee+g++ Cotton_A_01790_BGI-A2_v1.0 371 SRTSLERLKVEKMLFGEEIKNIIACEGAERKERHEKLEKWIQRLDLAGFGNVPLSYYGMLHARRLLQGYNCDGYKMKEENGCI 453 *********************************************************************************** PP GRAS 359 vlgWkdrpLvsvSaWr 374 +++W+drpL+svSaWr Cotton_A_01790_BGI-A2_v1.0 454 IICWQDRPLFSVSAWR 469 ***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.094 | 21 | 449 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.2E-141 | 47 | 469 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MFQDESSSVT SSSSPLQVFS MMSLSPNLGS PYPWLRELKS EERGLYLIHL LLTCANHVAN 60 GSLENANIAL EQISQLASPD GDTMQRMAAY FTEALADRIL KAWPGLHKAL NSTRITLLSE 120 EILVRKLFFE LFPFLKVAFV LTNQAIIEAM EGEKMVHIID LNAAEPAQWV ALIQALSARP 180 EGPPHLRITG IHQQKEVLDQ MAHRVIEEAE KLDIPFQFNP VVCKLENLDV DKLRVKTGEA 240 LAISSVLQLH SFLTSDDELL RKKSPLGSKN LNGIHLQRAL QMNQSTLGEL LEKDMVNGYS 300 PSPDSASSSP QSSTGSVKVD SFLNALWGLS PKLMVVTEQD SNHNGSTLME RLLESLHSYA 360 ALFDCSESTV SRTSLERLKV EKMLFGEEIK NIIACEGAER KERHEKLEKW IQRLDLAGFG 420 NVPLSYYGML HARRLLQGYN CDGYKMKEEN GCIIICWQDR PLFSVSAWRC RK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-41 | 47 | 469 | 4 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ908349 | 0.0 | DQ908349.1 Gossypium hirsutum clone LIB5327-014-A1-N1-G10_Gh410 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017608192.1 | 0.0 | PREDICTED: scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | A0A1U8HT55 | 0.0 | A0A1U8HT55_GOSHI; scarecrow-like protein 3 | ||||
STRING | Gorai.006G125700.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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