PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01774_BGI-A2_v1.0
Common NameF383_06434, F383_10219
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family SRS
Protein Properties Length: 356aa    MW: 37027.8 Da    PI: 7.9703
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01774_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702216.94.4e-671382964153
                      DUF702   4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsa 85 
                                  +++CqdCGnqakkdC+h+RCRtCCksrgfdC thv+stWvpaa+rrerq ++aa ++  a s+ +++ +k++r   ++++++
  Cotton_A_01774_BGI-A2_v1.0 138 SATTCQDCGNQAKKDCSHRRCRTCCKSRGFDCPTHVRSTWVPAARRRERQLMAAAVTTAGAGSSgSTSGAKKPRL-ITSQNTT 219
                                 5689*********************************************99999888877777636666777776.5888888 PP

                      DUF702  86 lsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                                 +s+t++s++++ ++++tss          lP +v+++avf+cvrv++v+dg++e+aYq+ v+igGhvfkG+LydqG+e
  Cotton_A_01774_BGI-A2_v1.0 220 TSHTSTSNTTP-RSFDTSSsnqdagfketLPGQVRAPAVFKCVRVTAVEDGDDEFAYQAIVKIGGHVFKGFLYDQGVE 296
                                 89999888865.5777777799******************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.3E-62140296IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.9E-27141183IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-28248295IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGMVGLRDFV VVAPASFNHH HHHHHHHHTQ DPIMSNDQIS GPSASTALGV GVGVFPLLTA  60
APCLAPLNVE DPDLFNNNGR TKLSGMQLWQ DQNSSPHNYL KKPSSFPDSN NSSSMKLIQS  120
SGGGGIGDGE SGGSGSSSAT TCQDCGNQAK KDCSHRRCRT CCKSRGFDCP THVRSTWVPA  180
ARRRERQLMA AAVTTAGAGS SGSTSGAKKP RLITSQNTTT SHTSTSNTTP RSFDTSSSNQ  240
DAGFKETLPG QVRAPAVFKC VRVTAVEDGD DEFAYQAIVK IGGHVFKGFL YDQGVEGRDG  300
FPNISELHLG GGPGSGGNGG GGRNGGSSSS PVLDPSEVYA ATGGCLLGSS YGNPIN
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609076.10.0PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like isoform X1
SwissprotQ94CK92e-91LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBLA0A0B0MFM40.0A0A0B0MFM4_GOSAR; tRNA-dihydrouridine(16/17) synthase [NAD (P)(+)]-like protein
STRINGGorai.006G123900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58832646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-71Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]