PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01712_BGI-A2_v1.0

Common Name

F383_15855

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MYB_related

Protein Properties

Length: 165aa MW: 18848.2 Da PI: 9.7753

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01712_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.4e-15	55	99	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Cotton_A_01712_BGI-A2_v1.0 55 PWTEEEHKLFLIGLQKFGKGDWRSISRNVVVTRTPTQVASHAQKY 99 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.829	48	104	IPR017930	Myb domain
SuperFamily	SSF46689	3.16E-17	50	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.5E-18	51	103	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.7E-12	52	98	IPR009057	Homeodomain-like
SMART	SM00717	4.7E-11	52	102	IPR001005	SANT/Myb domain
Pfam	PF00249	4.9E-13	55	99	IPR001005	SANT/Myb domain
CDD	cd00167	2.62E-10	55	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MLVYDVYEID AGRVQVPQYA DDSVMLSQSW DSHNQISFVS KSKHHGDGER KKGTPWTEEE 60 HKLFLIGLQK FGKGDWRSIS RNVVVTRTPT QVASHAQKYF LRQSAVKKER KRSSIHDITT 120 VDSKTMDVPV EQNRGSEPHG MVQQAPQLQQ LPHTGHFVGK YGYPM

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017608820.1	1e-120	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	7e-41	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A0B0NFJ5	1e-119	A0A0B0NFJ5_GOSAR; Transcription factor MYB1R1
STRING	Gorai.006G118200.1	1e-117	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5127	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04760.1	5e-62	MYB family protein

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]