PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01649_BGI-A2_v1.0

Common Name

F383_19449

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 671aa MW: 73061 Da PI: 7.1967

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01649_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.7	2.2e-09	465	502	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Cotton_A_01649_BGI-A2_v1.0 465 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 502 664559******************************88 PP
2	BELL	114.1	7.2e-37	324	396	1	72
BELL 1 erqelqkkkakLlslleeV.dkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+e d+rY++y+eq+qtv++sF+ v+g+g+a pYt+lA+ka+SrhFrcLkdai++q+ Cotton_A_01649_BGI-A2_v1.0 324 DRIEHQRRKVKLLSMLDEAcDRRYNHYCEQMQTVVNSFDLVMGYGAAIPYTALAQKAMSRHFRCLKDAISSQL 396 589***********9962789*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.2E-73	254	394	IPR006563	POX domain
Pfam	PF07526	3.9E-47	259	393	IPR006563	POX domain
PROSITE profile	PS50071	12.455	443	506	IPR001356	Homeobox domain
CDD	cd00086	1.09E-12	446	507	No hit	No description
SMART	SM00389	1.2E-9	446	510	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-17	447	513	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.7E-29	449	512	IPR009057	Homeodomain-like
Pfam	PF05920	3.3E-18	463	502	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence Send to blast
HHQAAAGIFS FSNGFERSAI NHQEQQQQLV QQIRRDKLRV QGFEPPPPPL VGIEEEESNA 60 LPVYESTGML SSEMFYFPSS VTVTAASTEL LDQSLQANYR GQLGESKNDR DSLAQQQQLP 120 SINADSAAAM HLFLMNPQTR SPSPPPPQPQ PPPRGFHGGA FPPQFTWVPD NSHEGGHGQG 180 QGQGLSLSLS SLQHLEAAKL YYNQGGATGG ADGGGGSSAT ATAQFQYKHD HHSPHQPLGL 240 VQNHQVHVGY NSSLGMVNVL RNSKYTKLAQ ELLEEFCSVG SGRFKKKKLG KNNINPSSNP 300 SNDGTTTNGS SSSTKDLPPF SASDRIEHQR RKVKLLSMLD EACDRRYNHY CEQMQTVVNS 360 FDLVMGYGAA IPYTALAQKA MSRHFRCLKD AISSQLKHSC ELLGEKDGVG TSGITKGETP 420 RLRMLEQSLR QQKAFHQIGM MEHEAWRPQR GLPERSVNIL RAWLFEHFLH PYPSDADKHL 480 LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQESKEGG DNNKGTRTNN NAAQTSTPST 540 TAVGGAGGAS PPPQPPENDP SLIGTNTTQC FSENQLTNTG TSTTNTSTAT EVTPPVSDSD 600 IHQRLLAVTD DTCHRGSNNI VGTITADNTD IGSTLIRFGT TGGDVSLTLG LRHPGNMPDK 660 ASSFSVTNFG G

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence Send to blast

HHQAAAGIFS FSNGFERSAI NHQEQQQQLV QQIRRDKLRV QGFEPPPPPL VGIEEEESNA  60
LPVYESTGML SSEMFYFPSS VTVTAASTEL LDQSLQANYR GQLGESKNDR DSLAQQQQLP  120
SINADSAAAM HLFLMNPQTR SPSPPPPQPQ PPPRGFHGGA FPPQFTWVPD NSHEGGHGQG  180
QGQGLSLSLS SLQHLEAAKL YYNQGGATGG ADGGGGSSAT ATAQFQYKHD HHSPHQPLGL  240
VQNHQVHVGY NSSLGMVNVL RNSKYTKLAQ ELLEEFCSVG SGRFKKKKLG KNNINPSSNP  300
SNDGTTTNGS SSSTKDLPPF SASDRIEHQR RKVKLLSMLD EACDRRYNHY CEQMQTVVNS  360
FDLVMGYGAA IPYTALAQKA MSRHFRCLKD AISSQLKHSC ELLGEKDGVG TSGITKGETP  420
RLRMLEQSLR QQKAFHQIGM MEHEAWRPQR GLPERSVNIL RAWLFEHFLH PYPSDADKHL  480
LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQESKEGG DNNKGTRTNN NAAQTSTPST  540
TAVGGAGGAS PPPQPPENDP SLIGTNTTQC FSENQLTNTG TSTTNTSTAT EVTPPVSDSD  600
IHQRLLAVTD DTCHRGSNNI VGTITADNTD IGSTLIRFGT TGGDVSLTLG LRHPGNMPDK  660
ASSFSVTNFG G

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	452	510	5	63	Homeobox protein Meis2
3k2a_B	2e-16	452	510	5	63	Homeobox protein Meis2
4xrm_A	2e-16	452	510	5	63	Homeobox protein Meis2
4xrm_B	2e-16	452	510	5	63	Homeobox protein Meis2
4xrs_A	2e-16	452	509	1	58	Homeobox protein Meis1
4xrs_B	2e-16	452	509	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269\|PubMed:17873098}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX622544	0.0	JX622544.1 Gossypium hirsutum clone NBRI_GE69320 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634650.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q94KL5	1e-155	BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBL	A0A0B0NSA1	0.0	A0A0B0NSA1_GOSAR; BEL1-like homeodomain protein 2
STRING	Gorai.003G018100.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2166	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-140	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]