PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01569_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 283aa    MW: 32336.4 Da    PI: 4.9939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01569_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.85e-4151111106
                         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratks 80 
                                 +ppGfrFhPtdeelv +yL+kk+++kk++l +vi+++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +
  Cotton_A_01569_BGI-A2_v1.0   5 VPPGFRFHPTDEELVGYYLRKKIASKKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATVA 86 
                                 69****************************.9***************953432233667************************ PP

                         NAM  81 gyWkatgkdkevlskkgelvglkktL 106
                                 g+Wkatg+dk+v++ k++l+g++ktL
  Cotton_A_01569_BGI-A2_v1.0  87 GFWKATGRDKAVYD-KSRLIGMRKTL 111
                                 **************.999*******9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-423123IPR003441NAC domain
PROSITE profilePS5100537.4575155IPR003441NAC domain
PfamPF023655.0E-196112IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MESCVPPGFR FHPTDEELVG YYLRKKIASK KIDLDVIRDI DLYRIEPWDL QERCRIGYEE  60
QNEWYFFSHK DKKYPTGTRT NRATVAGFWK ATGRDKAVYD KSRLIGMRKT LEEGWVVCRA  120
FKKRTSSQSK TIQGWDTTIF QDEPSGITSS AIFDPLADIS RQTQNFKQEI IVANNLNFID  180
HYDQFLQLPQ LESPSMPLIK KLPNTKEVTD WRDLDKFVAS QLSQEIRYGG GDEGGSSFGA  240
DTNGEISDMA VLLLQCSNNG GDEEGNKLNE LLSSDIGICL FDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-34211112118Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017640871.10.0PREDICTED: NAC domain-containing protein 37-like
SwissprotQ9SL411e-106NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A1U8MDB50.0A0A1U8MDB5_GOSHI; NAC domain-containing protein 37-like
TrEMBLA0A2P5X1V00.0A0A2P5X1V0_GOSBA; Uncharacterized protein
STRINGGorai.003G010700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36862661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-108vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]