PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01537_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bZIP | ||||||||
Protein Properties | Length: 201aa MW: 22313.7 Da PI: 7.9527 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.8 | 1.5e-15 | 131 | 181 | 4 | 54 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 ++r +r++kNRe+A rsR+RK+a++ eLe +v+ L +eN +L+ e e+l+ Cotton_A_01537_BGI-A2_v1.0 131 DRRHKRMIKNRESAARSRARKQAYTNELELEVAHLMEENAKLRREQEQLQV 181 689********************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-12 | 128 | 192 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.473 | 130 | 180 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.62E-30 | 132 | 186 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-14 | 132 | 181 | No hit | No description |
Pfam | PF00170 | 5.2E-14 | 132 | 180 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.38E-11 | 132 | 180 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 135 | 150 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MEEVWNDITL ASLHDHHSSS SSSREPFSSN PHLILQDFLA ARSDPPPPQQ QTNGGGDTNT 60 MLYGSPLPPP ATVLSLNSGP GFDFLDNPRL QSSPISTLPT FNSPFEALAS STTLATFGKK 120 RTQDSDNNSG DRRHKRMIKN RESAARSRAR KQAYTNELEL EVAHLMEENA KLRREQEQLQ 180 VAATAQLSRN RMLQRTSTAP F |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX615437 | 1e-144 | JX615437.1 Gossypium hirsutum clone NBRI_GE59423 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017646013.1 | 1e-145 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 2e-68 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A1U8N4G6 | 1e-143 | A0A1U8N4G6_GOSHI; protein FD-like | ||||
TrEMBL | A0A2P5X8Z6 | 1e-143 | A0A2P5X8Z6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G007000.1 | 1e-125 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 3e-61 | bZIP family protein |