PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01493_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 449aa    MW: 50972.3 Da    PI: 6.4107
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01493_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-18211257148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 +g WT eEd  l+++v+q+G + W+ Ia++++ gR +kqc++rw+++l
  Cotton_A_01493_BGI-A2_v1.0 211 KGQWTMEEDRMLIQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 257
                                 799*****************************.*************97 PP
2Myb_DNA-binding54.82.2e-17263305145
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                 ++ W++eEd+ l++a+ + G++ W+ Ia++++ gRt++++k++w+
  Cotton_A_01493_BGI-A2_v1.0 263 KDTWSEEEDKVLIQAHIEIGNK-WAEIAKRLP-GRTENSIKNHWN 305
                                 679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.007206261IPR017930Myb domain
SMARTSM007175.0E-17210259IPR001005SANT/Myb domain
SuperFamilySSF466891.55E-31210304IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-26212262IPR009057Homeodomain-like
CDDcd001679.57E-16214257No hitNo description
PfamPF139211.8E-19214272No hitNo description
SMARTSM007172.2E-16262310IPR001005SANT/Myb domain
PROSITE profilePS5129420.483262312IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-21263310IPR009057Homeodomain-like
CDDcd001671.39E-12265308No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MAKRYFTLVL VLIASSMEFD PKLRENMSPQ HQHHPMMLSE NNILKPLQTT TPLSSSSSKG  60
YYLQDFHHLD DDDDDQIQVN VSSSSWNPVF GVNAACYDPF DAFPYGCSTN RVDFYECKPF  120
AADHNTGNLG HGHVMDNFQS SVGLLNLRNT ISNDVIMMGS DVGYLPSFEF PNLGDEVSCV  180
TAENGYRVLV DSTSSRIRTN WKGRKKTNGV KGQWTMEEDR MLIQLVEQYG VRKWSHIAQM  240
LPGRIGKQCR ERWHNHLRPD IKKDTWSEEE DKVLIQAHIE IGNKWAEIAK RLPGRTENSI  300
KNHWNATKRR QFSKRKCRSK YPRGSILQEY IKSLNLDSTA AAAARSHEKA SDGAAVKVAD  360
NKSSSIKQPQ GLEIGPSTDR LVPEYEYDEV HEFSFDEKLL QESCSIESLL DQIPSTAAMA  420
DEKSFQMEDM GAVKKEMDLV EMISAHPNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-452103113104C-Myb DNA-Binding Domain
1msf_C1e-452103113104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6501060.0HQ650106.1 Gossypium hirsutum clone BAC 067L14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016728651.10.0PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L26e-99MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A1U8MP770.0A0A1U8MP77_GOSHI; transcription factor MYB98-like
STRINGGorai.008G295800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58692847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.11e-99myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]