PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01469_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 78202.6 Da PI: 6.6691 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.5e-21 | 28 | 83 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++lgL rq+k+WFqNrR+++k Cotton_A_01469_BGI-A2_v1.0 28 KKPYHRHTAHQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 83 78999************************************************998 PP | |||||||
2 | START | 178.5 | 3.8e-56 | 227 | 449 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWd 73 +a a++el+++ + +ep+W ks + +n + + ++f++ ++ ++ea+r+sgvv+m+ lv ++d++ +W Cotton_A_01469_BGI-A2_v1.0 227 IAANAMEELLRLLQTNEPLWIKSTndgkDALNLESYERIFPKPNNthfkspnIRVEASRDSGVVIMNGLALVDMFMDSN-KWL 308 67889********************99999999999999988777899***99**************************.*** PP TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE- CS START 74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRa 145 e ++ a+t+evis+g g lqlm+ elq+lsplvp R+f+++Ry++q ++g w+iv vS d +q+ ++ R+ Cotton_A_01469_BGI-A2_v1.0 309 ELFPtivsIAKTIEVISPGmlgthsGSLQLMYEELQVLSPLVPtREFYTLRYCQQIEQGLWAIVNVSYDLPQFASQ----CRS 387 ***999999****************************************************************987....*** PP EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 146 ellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 ++lpSg+li++++ng+skvtw+ehv+ ++++p h l+r lv+sg a+ga +w+ tlqr ce+ Cotton_A_01469_BGI-A2_v1.0 388 HRLPSGCLIQDMPNGYSKVTWLEHVEIEDKTPiHRLYRDLVHSGSAFGAERWLTTLQRMCER 449 ************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-21 | 11 | 85 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.3E-23 | 13 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.977 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.4E-19 | 27 | 89 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.61E-19 | 28 | 86 | No hit | No description |
Pfam | PF00046 | 1.5E-18 | 28 | 83 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 52.856 | 217 | 452 | IPR002913 | START domain |
SuperFamily | SSF55961 | 6.04E-39 | 218 | 450 | No hit | No description |
CDD | cd08875 | 1.30E-121 | 221 | 448 | No hit | No description |
SMART | SM00234 | 5.2E-47 | 226 | 449 | IPR002913 | START domain |
Pfam | PF01852 | 6.3E-49 | 227 | 449 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-7 | 292 | 431 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.65E-21 | 470 | 705 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MDCGSGGGGL GASGSGGDHD SSDLSRRKKP YHRHTAHQIQ RLESMFKECP HPDEKQRLQL 60 SRELGLAPRQ IKFWFQNRRT QMKAQHERAD NSALRAENDK IRCENIAIRE ALKNVICPSC 120 GGPPANEDSY FDDQKMRMEN AQLKEELDRV SSIAAKYIGR PISQLPPVQP VHISSLDFRM 180 ASFDGYGVGA GPSLDLDLLP GSSSSMPNLP FQPVVISDMD KSLMSDIAAN AMEELLRLLQ 240 TNEPLWIKST NDGKDALNLE SYERIFPKPN NTHFKSPNIR VEASRDSGVV IMNGLALVDM 300 FMDSNKWLEL FPTIVSIAKT IEVISPGMLG THSGSLQLMY EELQVLSPLV PTREFYTLRY 360 CQQIEQGLWA IVNVSYDLPQ FASQCRSHRL PSGCLIQDMP NGYSKVTWLE HVEIEDKTPI 420 HRLYRDLVHS GSAFGAERWL TTLQRMCERF ACLMVSSTST RDLGGVIPSP DGKRSIMKLA 480 QRMVNNFCTS VGTSNSHRST TLSGSNEIGV RVTVHKSSDP GQPNGIVLSA ATTFWLPVSP 540 QNVFSFFKDE RTRPQWDVLS NGNAVQEVAH IANGSHPGNC ISVLRAFNTS HNNMLILQES 600 CIDSSGSLVV YCPVDLPAIN VAMSGEDPSY IPLLPSGFTI TPDGHLEQGD GASTSSSTGH 660 GRSSGGSLIT VAFQILVSSL PSAKLNLDSV TTVNNLIGTT VQQIKAALNC PSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ595847 | 0.0 | KJ595847.1 Gossypium hirsutum homeodomain protein HOX3-A (HOX3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017635401.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A060AA38 | 0.0 | A0A060AA38_GOSHI; Homeodomain protein HOX3-A | ||||
STRING | Gorai.008G293300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3004 | 26 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |