PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01394_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TCP | ||||||||
Protein Properties | Length: 367aa MW: 41500.3 Da PI: 9.3314 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.5 | 3.9e-37 | 120 | 265 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssa 82 k+drhski T g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qa ++i +l++t s++++ +a++ +++ Cotton_A_01394_BGI-A2_v1.0 120 SKRDRHSKINTVNGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQARHEIMKLARTRVSHNNNNsvaTAAAAAVAK 202 69*************************************************************55555332234333333333 PP TCP 83 snsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 s ss + +k ++++k+ +k + +++ la++ r+karara+ rt+ k++ ++k Cotton_A_01394_BGI-A2_v1.0 203 SPSSTSegevvsalegTISKGKPTEKRVKKTTFQFHPLARDLREKARARAKARTKAKNMWNQK 265 32222246788888865555555888888889999********************99988866 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.0E-35 | 120 | 261 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.688 | 121 | 179 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.168 | 242 | 259 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MYPSNSNGSS EEPINDHSFF HFVTDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDAF 60 LHQHHDLLFH HEQYQQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNTDA EVKQQKRSSS 120 KRDRHSKINT VNGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA 180 RTRVSHNNNN SVATAAAAAV AKSPSSTSEG EVVSALEGTI SKGKPTEKRV KKTTFQFHPL 240 ARDLREKARA RAKARTKAKN MWNQKLCGST DENKLSSWCS FQTGEESSIQ HHHHNKKINP 300 SLQQVAGGDM IDESLAIINK WNPNSMFNCL QNSGINQEAS TKFLYNIVPL IFCLSAANSR 360 TKPNYNK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017636045.1 | 0.0 | PREDICTED: transcription factor TCP18-like | ||||
TrEMBL | A0A1U8LYB9 | 0.0 | A0A1U8LYB9_GOSHI; transcription factor TCP18 | ||||
STRING | Gorai.008G285300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24297 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.1 | 1e-21 | TCP family protein |