PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01394_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TCP
Protein Properties Length: 367aa    MW: 41500.3 Da    PI: 9.3314
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01394_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.53.9e-371202653135
                         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssa 82 
                                  k+drhski T  g+RdRR+Rls+++a++fF Lqd+LG+dk+s t+eWLl qa ++i +l++t  s++++    +a++  +++
  Cotton_A_01394_BGI-A2_v1.0 120 SKRDRHSKINTVNGPRDRRMRLSLDVAREFFGLQDMLGYDKASRTVEWLLIQARHEIMKLARTRVSHNNNNsvaTAAAAAVAK 202
                                 69*************************************************************55555332234333333333 PP

                         TCP  83 snsssg..........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                                 s ss +            +k ++++k+ +k + +++ la++ r+karara+ rt+ k++ ++k
  Cotton_A_01394_BGI-A2_v1.0 203 SPSSTSegevvsalegTISKGKPTEKRVKKTTFQFHPLARDLREKARARAKARTKAKNMWNQK 265
                                 32222246788888865555555888888889999********************99988866 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.0E-35120261IPR005333Transcription factor, TCP
PROSITE profilePS5136929.688121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.168242259IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MYPSNSNGSS EEPINDHSFF HFVTDSKQED PSFGFFNFPS PYYSQCELEQ VFQDQDHDAF  60
LHQHHDLLFH HEQYQQPLMA DSVSGTIVNV PATSAVDCTK KKSNNHNTDA EVKQQKRSSS  120
KRDRHSKINT VNGPRDRRMR LSLDVAREFF GLQDMLGYDK ASRTVEWLLI QARHEIMKLA  180
RTRVSHNNNN SVATAAAAAV AKSPSSTSEG EVVSALEGTI SKGKPTEKRV KKTTFQFHPL  240
ARDLREKARA RAKARTKAKN MWNQKLCGST DENKLSSWCS FQTGEESSIQ HHHHNKKINP  300
SLQQVAGGDM IDESLAIINK WNPNSMFNCL QNSGINQEAS TKFLYNIVPL IFCLSAANSR  360
TKPNYNK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636045.10.0PREDICTED: transcription factor TCP18-like
TrEMBLA0A1U8LYB90.0A0A1U8LYB9_GOSHI; transcription factor TCP18
STRINGGorai.008G285300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2429734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.11e-21TCP family protein