PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01340_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 137aa    MW: 15605.8 Da    PI: 9.0104
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01340_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.3e-3951041100
                      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 
                                 +CaaC++lrr+C++dC+++pyfp ++p++fa +h+++Gasnv kll++lp + r++a++sl+ eA+ r++dPvyG+vg+i+ l
  Cotton_A_01340_BGI-A2_v1.0   5 RCAACRYLRRRCPPDCIFSPYFPPNNPQRFASIHRIYGASNVAKLLQRLPSHLRTQAADSLYLEAQYRIEDPVYGCVGLISLL 87 
                                 6********************************************************************************** PP

                      DUF260  84 qqqleqlkaelallkee 100
                                 qqq++  + +la++++e
  Cotton_A_01340_BGI-A2_v1.0  88 QQQIHDIERQLAMTQAE 104
                                 ************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.6614105IPR004883Lateral organ boundaries, LOB
PfamPF031955.3E-405102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MNPSRCAACR YLRRRCPPDC IFSPYFPPNN PQRFASIHRI YGASNVAKLL QRLPSHLRTQ  60
AADSLYLEAQ YRIEDPVYGC VGLISLLQQQ IHDIERQLAM TQAEIAFRAR HPQAVEGNLL  120
NNVGNPSFSN QASSWFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-41610512111LOB family transfactor Ramosa2.1
5ly0_B8e-41610512111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636051.12e-98PREDICTED: LOB domain-containing protein 24-like
SwissprotP594687e-52LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A2P5WY404e-97A0A2P5WY40_GOSBA; Uncharacterized protein
STRINGGorai.008G280400.18e-94(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.15e-43LOB domain-containing protein 24