PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01315_BGI-A2_v1.0
Common NameF383_02366
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 292aa    MW: 32994.8 Da    PI: 7.0547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01315_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.3e-161764148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                +g W++eEd++l ++v ++G g+W++++   g+ R +k+c++rw +yl
  Cotton_A_01315_BGI-A2_v1.0 17 KGLWSPEEDLKLRNYVLKHGHGCWSSVPINAGLLRNGKSCRLRWINYL 64
                                678*****************************99************97 PP

2Myb_DNA-binding55.11.8e-1770115148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
             Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                 rg +T++E+e ++ ++++lG++ W+ Ia+ ++ gRt++++k++w++yl
  Cotton_A_01315_BGI-A2_v1.0  70 RGTFTPQEEETILTLHHLLGNK-WSQIAQNLP-GRTDNEIKNYWHSYL 115
                                 899*******************.*********.************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-221167IPR009057Homeodomain-like
PROSITE profilePS5129416.751264IPR017930Myb domain
SuperFamilySSF466898.44E-2915111IPR009057Homeodomain-like
SMARTSM007173.4E-121666IPR001005SANT/Myb domain
PfamPF002492.2E-141764IPR001005SANT/Myb domain
CDDcd001672.07E-102064No hitNo description
PROSITE profilePS5129426.39665119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2668119IPR009057Homeodomain-like
SMARTSM007171.9E-1669117IPR001005SANT/Myb domain
PfamPF002491.7E-1670115IPR001005SANT/Myb domain
CDDcd001674.70E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVSKPSENNK PKAKHKKGLW SPEEDLKLRN YVLKHGHGCW SSVPINAGLL RNGKSCRLRW  60
INYLRPGLKR GTFTPQEEET ILTLHHLLGN KWSQIAQNLP GRTDNEIKNY WHSYLKKRIA  120
KAEEMDSQAR SQCTTSSSEN KQSTPSSRIF SDQMPTYESF NHIDKLSVST DRAVPQHVID  180
FSKEPQRSPL PKVLFAEWLS LDQECGPAAT SYGFNHNSSS NFQDPFMDAF LLNEGTFGGS  240
DLHDGLSNGS ANEMFSSQFD FETQISGNQF VGSLSGDDIC SDFNMNNNVM YM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22171197108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017636699.10.0PREDICTED: transcription factor WER-like
SwissprotQ9M0K46e-56LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0B0PFQ30.0A0A0B0PFQ3_GOSAR; Transcription factor LAF1-like protein
STRINGGorai.008G277900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-54myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]