PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01196_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | TALE | ||||||||
Protein Properties | Length: 425aa MW: 46917.3 Da PI: 6.2666 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.6 | 1.9e-07 | 374 | 407 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Cotton_A_01196_BGI-A2_v1.0 374 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 407 469*****************************87 PP | |||||||
2 | ELK | 28.8 | 2.8e-10 | 328 | 349 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Cotton_A_01196_BGI-A2_v1.0 328 ELKHELKQGYKEKIVDIREEIL 349 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.7E-18 | 160 | 204 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.0E-16 | 162 | 203 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.5E-29 | 216 | 271 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.7E-21 | 220 | 270 | IPR005541 | KNOX2 |
Pfam | PF03789 | 9.9E-7 | 328 | 349 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 328 | 348 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 328 | 349 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.451 | 348 | 411 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.1E-10 | 350 | 415 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.45E-15 | 351 | 414 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.2E-25 | 355 | 412 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.68E-11 | 362 | 412 | No hit | No description |
Pfam | PF05920 | 9.8E-18 | 368 | 407 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MAFHPNHLSQ DLPLHHFTFQ QQQTNQLPET TAPNWLNTAL LRSQQESQPP QPHAHFSDPN 60 FLNLHTATTA SESTSASQAP NQWLSPSSSS LLQRNHSGVV DDVAAVAAAG GGVGRETMVA 120 VEPGELKSSN SESMNNNNKS EGVAVESGGG GDGAVNWQNA RYKAEVLAHP LYEQLLSAHV 180 ACLRIATPVD QLPRIDSQLA QSQHVVAKYS ALGGGAQGLV GDDKELDQFM THYVLLLCSF 240 KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDDEEQI DSDANLFDGS 300 MEGPDSLGFG PLVPTESERS LMERVRQELK HELKQGYKEK IVDIREEILR KRRAGKLPGG 360 TTSVLKAWWQ SHSKWPYPTE EDKAKLVQET GLQLKQINNW FINQRKRNWH SNPSTSTVLK 420 NKRKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 404 | 424 | RKRNWHSNPSTSTVLKNKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017627618.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1U8PGW6 | 0.0 | A0A1U8PGW6_GOSHI; homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A2P5WPI5 | 0.0 | A0A2P5WPI5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G060200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 0.0 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
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