PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01077_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

FAR1

Protein Properties

Length: 752aa MW: 87357.2 Da PI: 7.5251

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01077_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.6	3.2e-26	29	114	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 +Y++YAk+vGF + k +s++s+ ++e+++++f+C ++g++++++++ ++r++ ++gCka+++vk+++dgkw+v+++ +e Cotton_A_01077_BGI-A2_v1.0 29 YYKDYAKSVGFGTAKLSSRRSRVSKEFIDAKFTCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFIKE 107 9*************************************999877....9**************************** PP FAR1 85 HnHelap 91 HnHel p Cotton_A_01077_BGI-A2_v1.0 108 HNHELLP 114 **975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-24	29	114	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.7E-30	226	319	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.781	506	542	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.3E-9	513	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-8	517	544	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 752 aa Download sequence Send to blast
MDSSIGTSDI ILASHRELEF ESHEAAYSYY KDYAKSVGFG TAKLSSRRSR VSKEFIDAKF 60 TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKEHNH ELLPAQAHFF 120 RSHRNVDPLK TDVGRKRKNL ASVSKLFSAY QNIDFLEGYM RNQHDKGRSL VLEEGDAQVL 180 LELLMHMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD TTYFTNKYKI 240 PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPQVML TDQNNAIKAA 300 VATVFPTTRH CFCLWHVLEK LPRHLEYLSL WHDSLMLKLD KCIYRSWTED QFEKRWWKMV 360 DKFHLREMQW VLSLYEDRKR WVPVFMRDIS FAGFSTALRS DSLSSSFDKY VHGETSLREF 420 IEHYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQIS LVYTHEVFKK FQVEVLGAAA 480 CHLKKENEDQ VPATYSVKDF EDNQNYMVEW NEAKSDIYCS CRSFEYKGYL CRHAIVVLQM 540 SGVFNIPSKY ILQRWTNAAL SRLPISQKLD EVQSKVRRYN DLCRRAIILS EEGSLSQESY 600 NLALSAIKEA LKQCASVNNS VENEYRPNTS IIRADSCVER VSQCVNTQEK AADPRMTNTT 660 KTCQSIETAL ERQINENNAT RKGKVSLAGA VNVGSQDGFH QMEMSDMRPT QLHNVMPPTQ 720 LHNMVPTMFT NVASTHFQNV AATHLHDNRL HR

Sequence ? help Back to Top

Protein Sequence Length: 752 aa Download sequence Send to blast

MDSSIGTSDI ILASHRELEF ESHEAAYSYY KDYAKSVGFG TAKLSSRRSR VSKEFIDAKF  60
TCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFIKEHNH ELLPAQAHFF  120
RSHRNVDPLK TDVGRKRKNL ASVSKLFSAY QNIDFLEGYM RNQHDKGRSL VLEEGDAQVL  180
LELLMHMQEE NPKFFYAVDL NEEHRLRNVF WVDAKGMEDF SNFGDVVSFD TTYFTNKYKI  240
PLVLFIGVNH HIQPTLLGCA LIADETVYTF LWLMQTWFIA MGERAPQVML TDQNNAIKAA  300
VATVFPTTRH CFCLWHVLEK LPRHLEYLSL WHDSLMLKLD KCIYRSWTED QFEKRWWKMV  360
DKFHLREMQW VLSLYEDRKR WVPVFMRDIS FAGFSTALRS DSLSSSFDKY VHGETSLREF  420
IEHYRVILED RYEEEAKADF NAWHETPELK SPSPFEKQIS LVYTHEVFKK FQVEVLGAAA  480
CHLKKENEDQ VPATYSVKDF EDNQNYMVEW NEAKSDIYCS CRSFEYKGYL CRHAIVVLQM  540
SGVFNIPSKY ILQRWTNAAL SRLPISQKLD EVQSKVRRYN DLCRRAIILS EEGSLSQESY  600
NLALSAIKEA LKQCASVNNS VENEYRPNTS IIRADSCVER VSQCVNTQEK AADPRMTNTT  660
KTCQSIETAL ERQINENNAT RKGKVSLAGA VNVGSQDGFH QMEMSDMRPT QLHNVMPPTQ  720
LHNMVPTMFT NVASTHFQNV AATHLHDNRL HR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017631722.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A1U8PI32	0.0	A0A1U8PI32_GOSHI; protein FAR1-RELATED SEQUENCE 4-like isoform X2
STRING	Gorai.009G072000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]