PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01049_BGI-A2_v1.0
Common NameF383_01179, F383_26384
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 719aa    MW: 78546.7 Da    PI: 5.6366
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01049_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2048103156
                                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                 +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  Cotton_A_01049_BGI-A2_v1.0  48 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 103
                                 688999***********************************************999 PP
2START2176.6e-682314511206
                                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-T CS
                       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWde 74 
                                 ela +a++elv++a+ +ep+W++s       +n++e++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d++ qW++
  Cotton_A_01049_BGI-A2_v1.0 231 ELAVAAMEELVRMAQMGEPLWMTSLdgttYVLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVN-QWST 312
                                 57899********************9888889***********999********************************.**** PP

                                 T-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-E CS
                       START  75 tla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRae 146
                                  +     ka+tl+v+s+g      galq+m ae+q+lsplvp R++++vRy++q+ +g+w++vd S+d+ ++ p+    +R++
  Cotton_A_01049_BGI-A2_v1.0 313 VFSgivsKASTLDVLSTGiagnynGALQVMAAEFQVLSPLVPtRESYYVRYCKQHAEGTWAVVDASLDNIRPSPT----ARCR 391
                                 ************************************************************************996....**** PP

                                 ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                       START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                 ++pSg+li++++ng+skvtwvehv+++++ +h+l+++lv+sg+a+ga++w atl+rqce+
  Cotton_A_01049_BGI-A2_v1.0 392 RRPSGCLIQEMPNGYSKVTWVEHVEVDDSGVHSLYKQLVSSGHAFGAQRWIATLDRQCER 451
                                 **********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-2227103IPR009057Homeodomain-like
SuperFamilySSF466895.01E-1936105IPR009057Homeodomain-like
PROSITE profilePS5007116.68245105IPR001356Homeobox domain
SMARTSM003894.0E-1946109IPR001356Homeobox domain
PfamPF000461.1E-1748103IPR001356Homeobox domain
CDDcd000861.43E-1848106No hitNo description
PROSITE profilePS5084844.868222454IPR002913START domain
SuperFamilySSF559611.1E-34224453No hitNo description
CDDcd088752.80E-130226450No hitNo description
SMARTSM002347.0E-61231451IPR002913START domain
PfamPF018524.7E-57232451IPR002913START domain
Gene3DG3DSA:3.30.530.201.9E-5327432IPR023393START-like domain
SuperFamilySSF559613.65E-24471711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MEGQLHPLES ESEIGRMRDD ELDSTTKSGS ENHEAASGDD QNPRPNKKKR YHRHTQHQIQ  60
EMEAFFKECP HPDDKQRKEL GRELGLEPLQ VKFWFQNKRT QMKTQHERHE NTQLRTENEK  120
LRADNMRYRE ALSTASCPNC GGPTAVGQMS FDEHHLRLEN ARLREEIDRI SAIAAKYVGK  180
PVVSYPLLSS PMTPRPFEFG AQPGTGDMYG AGDLLRSISS PSEADKPIII ELAVAAMEEL  240
VRMAQMGEPL WMTSLDGTTY VLNEEEYIRT FPRGIGPKPT GFKCEASRET AVVIMNHINL  300
VEILMDVNQW STVFSGIVSK ASTLDVLSTG IAGNYNGALQ VMAAEFQVLS PLVPTRESYY  360
VRYCKQHAEG TWAVVDASLD NIRPSPTARC RRRPSGCLIQ EMPNGYSKVT WVEHVEVDDS  420
GVHSLYKQLV SSGHAFGAQR WIATLDRQCE RLASVMATNV PTGDVGVITN QDGRKSMLKL  480
AERMVMSFCA GVSASTAHTW TTLSGTGADD VRVMTRKSVD DPGRPPGIVL SAATSFWLPV  540
SPKRVFDFLR DENSRSEWDI LSNGGVVQEM AHIANGRDTG NCVSLLRVNS ANSSQSNMLI  600
LQESCADPTA SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGST ITATTSSAGG  660
GIDTDAAGSS GGSLLTVAFQ ILVDSVPTAK LSLGSVATVN NLIACTVERI KASLSCENA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017631647.10.0PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A0B0MP740.0A0A0B0MP74_GOSAR; Homeobox-leucine zipper HDG2-like protein
STRINGGorai.013G100200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2