PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00996_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 19300 Da PI: 7.4344 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.1 | 1.7e-39 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +CaaCk+l+r+C+++C++apyf ++++kkfa vhk+FGasnv+k+l ++pee+red+++sl++eAear+rdPv+G++g i l Cotton_A_00996_BGI-A2_v1.0 11 SCAACKLLKRRCSPNCIFAPYFRSDEAKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAFEAEARLRDPVHGCIGAIALL 93 6********************************************************************************** PP DUF260 84 qqqleqlkaelallke 99 q+++ ql+++lal+++ Cotton_A_00996_BGI-A2_v1.0 94 QRKMIQLQHDLALARA 109 ***********99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.256 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-39 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MRGHEPRSTS SCAACKLLKR RCSPNCIFAP YFRSDEAKKF AKVHKVFGAS NVSKILVEVP 60 EEQREDTVNS LAFEAEARLR DPVHGCIGAI ALLQRKMIQL QHDLALARAC LARYVATPSV 120 IFSSDDHHRV ITGPFDDFPV DCGVSFGSFN QNISYELNQE ANMYDFSQIP YI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-43 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-43 | 6 | 114 | 6 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618826.1 | 1e-127 | PREDICTED: LOB domain-containing protein 21 | ||||
Refseq | XP_017621588.1 | 1e-127 | PREDICTED: LOB domain-containing protein 21-like | ||||
Swissprot | Q9SRL8 | 2e-63 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | A0A1U8KNB2 | 1e-125 | A0A1U8KNB2_GOSHI; LOB domain-containing protein 21-like | ||||
TrEMBL | A0A2P5XEG6 | 1e-125 | A0A2P5XEG6_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G016900.1 | 1e-120 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 7e-66 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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