PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00984_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 117aa    MW: 13772 Da    PI: 9.9782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00984_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.3e-18590185
                                EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEE CS
                          B3  1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvF 82
                                f kvl  s +  ++rl +p + + ++   + ++  +  ++d++g++We++++ rkk+ +   v +kGW++Fvk++gL++gD +vF
  Cotton_A_00984_BGI-A2_v1.0  5 FSKVL--SPTDIEHRLAVPSEILWAFeFDQARRCADFEVKDKHGQTWEFRCSTRKKDFHpkPVVSKGWRKFVKDKGLQAGDKIVF 87
                                67788..55666678*******9999855667888****************877777669999********************** PP

                                EE- CS
                          B3 83 kld 85
                                + d
  Cotton_A_00984_BGI-A2_v1.0 88 YKD 90
                                *43 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-20296IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.1383105IPR003340B3 DNA binding domain
CDDcd100171.05E-19499No hitNo description
SuperFamilySSF1019366.54E-18494IPR015300DNA-binding pseudobarrel domain
PfamPF023625.2E-15590IPR003340B3 DNA binding domain
SMARTSM010198.8E-95105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MKQLFSKVLS PTDIEHRLAV PSEILWAFEF DQARRCADFE VKDKHGQTWE FRCSTRKKDF  60
HPKPVVSKGW RKFVKDKGLQ AGDKIVFYKD VEGDSSYKII TMKKVFKLFG EEVWLPS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017617847.12e-81PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A0D2V8008e-80A0A0D2V800_GOSRA; Uncharacterized protein
TrEMBLA0A2P5SHU38e-80A0A2P5SHU3_GOSBA; Uncharacterized protein
STRINGGorai.013G018200.11e-80(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2206445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-12B3 family protein