PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00913_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 219aa    MW: 24172.9 Da    PI: 5.1757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00913_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-2072122256
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                  y+GVr++  +g+WvAeIr+p+   k kr +lg+f ta++Aa a+++a+k ++ge
  Cotton_A_00913_BGI-A2_v1.0  72 IYRGVRQRT-WGKWVAEIRVPN---KGKRLWLGTFPTAFQAALAYDEAAKTMYGE 122
                                 6*****999.**********93...25*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-2971131No hitNo description
PfamPF008471.0E-1471122IPR001471AP2/ERF domain
SMARTSM003801.5E-3472135IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2072131IPR016177DNA-binding domain
PROSITE profilePS5103221.39172129IPR001471AP2/ERF domain
PRINTSPR003671.3E-97384IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3073131IPR001471AP2/ERF domain
PRINTSPR003671.3E-995111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGFSENQNPN VGIPLFSDSS RKRKRRNGLS VADTLKQWSE NSDTKKALKP PAKGSKKGCM  60
KGKGGPQNQD CIYRGVRQRT WGKWVAEIRV PNKGKRLWLG TFPTAFQAAL AYDEAAKTMY  120
GEKAILNMPH SSDPTTTTSA CSESTTATAS DVNAEVREEA KVAAEEDESM NEMDYSWLNG  180
LEFKDDIALN CGGNNNISVW DGGWLFNEDE CFSIDELLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1773129360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-17731301573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12025RKRKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017618872.11e-163PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotQ8LFR25e-46DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A1U8MSC01e-161A0A1U8MSC0_GOSHI; dehydration-responsive element-binding protein 2A-like
TrEMBLA0A2P5W9M41e-161A0A2P5W9M4_GOSBA; Uncharacterized protein
STRINGGorai.013G025100.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.21e-35DRE-binding protein 2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]