PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00864_BGI-A2_v1.0
Common NameF383_02164
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 379aa    MW: 43317.5 Da    PI: 4.4048
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00864_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.11e-311869103
                                 HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
                HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                                 +++de+++ +isws+n++sf+++d++ef+ ++Lpk+Fkhsnf+SF+RQLn+YgF+k+++++         weF+++ F +g+k
  Cotton_A_00864_BGI-A2_v1.0   1 MVDDESTDAIISWSQNNDSFIIWDMTEFSVHLLPKFFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRGQK 74 
                                 899*******************************************************999.........************* PP

                                 XXXXXXXXXXXX CS
                HSF_DNA-bind  92 ellekikrkkse 103
                                 +ll++i r+k++
  Cotton_A_00864_BGI-A2_v1.0  75 DLLKNIARRKHS 86 
                                 *********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004475.5E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004151.5E-44183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.3E-32183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.62E-30183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-93244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-94557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MVDDESTDAI ISWSQNNDSF IIWDMTEFSV HLLPKFFKHS NFSSFIRQLN IYGFRKIDTD  60
RWEFANDGFV RGQKDLLKNI ARRKHSPGSE QRKPLQQQPL QQLENTVGSC ENNENTALWK  120
EVENLKTDKN ALMQELVKLT QFQETADNKV LLLKERLQGM EKSQQQLLSF LIMAMQSPGF  180
LVQLIQPKEN NWRMAEPSNM LEQVTEDGEP IASDNMIVRY QPPMDGTSKP VLAPVVDCEN  240
PHESDNSSDG TKDFWMNIDF VKVLMDESHT PFIPPDIHDD GAWEKLLLGN TFLENNDSGN  300
QDKESPLNSG MEMEVTDSET HSEKSCSFEQ LLQNMGKSQN LEIEPLVNGS PLEKSPDLEL  360
LTDQMGHLTS ESTKPHRTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-2018336129Heat shock factor protein 1
5d5v_B1e-2018336129Heat shock factor protein 1
5d5v_D1e-2018336129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674210.0KR067421.1 Gossypium hirsutum HSF40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619515.10.0PREDICTED: heat stress transcription factor A-8-like
RefseqXP_017619516.10.0PREDICTED: heat stress transcription factor A-8-like
TrEMBLA0A0B0MC430.0A0A0B0MC43_GOSAR; Heat stress transcription factor A-8-like protein
STRINGGorai.N013300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70452637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-105heat shock transcription factor A8