PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00841_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 216aa MW: 24442.2 Da PI: 4.7079 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 32.9 | 1.9e-10 | 2 | 82 | 43 | 128 |
NAM 43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmh 124 ePw++ ++e e f++ ++ k+++++r +r+t +g W ++ kev++k +ge++g k +++ + +++k ++ +W+mh Cotton_A_00841_BGI-A2_v1.0 2 EPWNIF---DQELPES-FWILTKLKKKSKSRIERTTGDGCWLQQFA-KEVKNKdGGEVIGYDKYFTYTS-KKNKKSNGQWIMH 78 688874...2222344.5555666667789************9877.55555549999*********95.5555589****** PP NAM 125 eyrl 128 e+ l Cotton_A_00841_BGI-A2_v1.0 79 EFFL 82 *976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.544 | 1 | 101 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-5 | 3 | 80 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.35E-11 | 3 | 101 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
REPWNIFDQE LPESFWILTK LKKKSKSRIE RTTGDGCWLQ QFAKEVKNKD GGEVIGYDKY 60 FTYTSKKNKK SNGQWIMHEF FLKEQEAVGL SDLVICEIKN KDAAALSSDY EESKGEIKKN 120 KKRKLMEVPS DSTNDFATVP VENQTFDYMA PEVGGFSPFS ACLDQQPNPW TSAGVGGNLG 180 VPDYNSHHLE EANEAGDGNL FFTFQELDSI LNSDQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 124 | KKNKKRKL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX596395 | 1e-35 | JX596395.1 Gossypium hirsutum clone NBRI_GE32970 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618043.1 | 1e-131 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | A0A1U8IHN0 | 1e-127 | A0A1U8IHN0_GOSHI; NAC domain-containing protein 83-like | ||||
STRING | Gorai.013G066200.1 | 1e-119 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16345 | 3 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-07 | NAC domain containing protein 28 |