PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00831_BGI-A2_v1.0 | ||||||||
Common Name | F383_12543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 197aa MW: 22509.9 Da PI: 5.3465 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 119.8 | 2.5e-37 | 10 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 +ppGfrFhPtdeelvv++L++k++ +++ +vi+++++y ++Pw+L+ k+ +e k+wy++s+r++ nr t++gyW Cotton_A_00831_BGI-A2_v1.0 10 VPPGFRFHPTDEELVVHFLQRKAALLPCHP-DVIPDLHLYPYDPWELDGKALGEGKQWYYYSRRSE--------NRNTRNGYW 83 69*************************999.99**************977778899******9865........788999*** PP NAM 84 katgkdkevlsk.kgelvglkktLvfykgrap..kgektdWvmheyrl 128 ka g +++v+++ +++ vg+kk Lvf+ g+a+ g+ktdWvmheyrl Cotton_A_00831_BGI-A2_v1.0 84 KAMGMEESVVNSsSSRRVGIKKYLVFFIGEAEggGGVKTDWVMHEYRL 131 *******9999867888**********7766511578*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-46 | 8 | 164 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 45.577 | 10 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.7E-24 | 11 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MGDNNSINKV PPGFRFHPTD EELVVHFLQR KAALLPCHPD VIPDLHLYPY DPWELDGKAL 60 GEGKQWYYYS RRSENRNTRN GYWKAMGMEE SVVNSSSSRR VGIKKYLVFF IGEAEGGGGV 120 KTDWVMHEYR LSDSDSSSST SRSSKRRGHN SKIDYSKWVI CRVHERSCST SDEEDGGMEL 180 SCLDEVFLSL DDDDEIS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-38 | 10 | 171 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 1e-38 | 10 | 171 | 20 | 173 | NAC domain-containing protein 19 |
4dul_A | 1e-38 | 10 | 171 | 17 | 170 | NAC domain-containing protein 19 |
4dul_B | 1e-38 | 10 | 171 | 17 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016675578.1 | 1e-145 | PREDICTED: NAC domain-containing protein 104-like | ||||
Refseq | XP_017618237.1 | 1e-145 | PREDICTED: NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 5e-79 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A0B0N9U6 | 1e-144 | A0A0B0N9U6_GOSAR; NAC domain-containing 68 | ||||
TrEMBL | A0A1U8IGV1 | 1e-144 | A0A1U8IGV1_GOSHI; NAC domain-containing protein 104-like | ||||
STRING | Gorai.013G063500.1 | 1e-118 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3674 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 5e-74 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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