PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_00802_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 1073aa MW: 120632 Da PI: 6.1922 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 185.4 | 5.8e-58 | 20 | 136 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 l+ ++rwl++ ei++iL n++k+++t+e++trp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cy Cotton_A_00802_BGI-A2_v1.0 20 LEAQHRWLRPAEICEILRNYQKFHITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCY 102 5679******************************************************************************* PP CG-1 85 YahseenptfqrrcywlLeeelekivlvhylevk 118 Yah+een++fqrr+yw+Le +l +iv+vhylevk Cotton_A_00802_BGI-A2_v1.0 103 YAHGEENENFQRRSYWMLEPDLMHIVFVHYLEVK 136 *******************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 86.033 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 9.0E-85 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 9.8E-52 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 7.0E-6 | 491 | 580 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 5.2E-7 | 494 | 573 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 5.6E-17 | 494 | 580 | IPR014756 | Immunoglobulin E-set |
PROSITE profile | PS50297 | 16.016 | 676 | 793 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 4.47E-11 | 676 | 791 | No hit | No description |
SuperFamily | SSF48403 | 1.1E-13 | 677 | 793 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-14 | 679 | 796 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00015 | 0.5 | 892 | 914 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.17E-7 | 892 | 943 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 7.858 | 893 | 922 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0016 | 894 | 913 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0092 | 915 | 937 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.413 | 916 | 940 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 4.7E-4 | 918 | 937 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1073 aa Download sequence Send to blast |
MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILRNYQ KFHITSEPPT RPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML 120 EPDLMHIVFV HYLEVKGSRT IGGIRENSDL SNSQTSSLLT SSNSVTHTKE PSAHANSACS 180 ITSLTSLYED ADSEDSRQAS SRVRTSPQIG NATVMDKLDP GFLNHYSPHP IQGQSSIPGV 240 TEVSHLHGDR PGDTNYGSCI SEAQRTLGLT SWEQGLEPYV PVYADAFSNT SLTSTQPDTI 300 SISLQQETMM KGKLLAVESA GGEFGNPLPT QPHWQNPLAD NALELPKWSM DSSSNFDLPF 360 DSKLFEQSAH DFQNTLEEFA GHGVFNDQPL HKNLQMQSIN ADSHSVWRTY PDNYMHLDGN 420 VNYALSLKKS LLDGEESLKK VDSFSRWVTK ELGEVDNLQM QSSSGIAWST VECGSVSDDA 480 SLSPSLSHDQ LFSIVDFSPK WAYIDLKTEV LIIGTYLRSQ EQVAKCNWSC MFGEVEVPAE 540 VIADGILSCY APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFTKDINIL DIYDIASREM 600 LMRFERLLSL KSSNYPNHHS EGVREKRELI TKIISMREEE ECHWIVDPSS DKDVSQQKEK 660 DCLLQKLMKE KLYSWLLHKI MEDGKGPNVL DEKGQGVLHL AAALGYDWAI KPTVTAGVSI 720 NFRDANGWTA LHWAAFCGRQ GPLNLEQTVA ILVSLGAAAG ALTDPTPEFP LGRPPADLAS 780 DNGHKGISGF LAESSLTSFL SNLTMNDQKE AVQTVSDRIA TPVYDSDEIL SLKDSLTAVC 840 NATQAADRIH QMFRMQSFQR KQLSESGHGV SDEHAISLLT AKARRPLHID GVAHAAATQI 900 QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRTII WSVGILEKVI LRWRRKGSGL 960 RGFRRDAITK EPDPQCTPSK EDDYDFLKEG RKQTEERLQK ALTRVKSMAQ NPEGRGQYRR 1020 LLTLVQGIRE NKACDMVLSS TEEAGEGEGD GDEDFIDIDS LLDDETFMSI AFE |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017619166.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 2-like | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A1U8IFK6 | 0.0 | A0A1U8IFK6_GOSHI; calmodulin-binding transcription activator 2-like | ||||
STRING | Gorai.013G061100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4082 | 24 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
---|---|---|---|
|