PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_00802_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 1073aa    MW: 120632 Da    PI: 6.1922
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_00802_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1185.45.8e-58201362118
                        CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycy 84 
                                 l+ ++rwl++ ei++iL n++k+++t+e++trp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cy
  Cotton_A_00802_BGI-A2_v1.0  20 LEAQHRWLRPAEICEILRNYQKFHITSEPPTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDMLHCY 102
                                 5679******************************************************************************* PP

                        CG-1  85 YahseenptfqrrcywlLeeelekivlvhylevk 118
                                 Yah+een++fqrr+yw+Le +l +iv+vhylevk
  Cotton_A_00802_BGI-A2_v1.0 103 YAHGEENENFQRRSYWMLEPDLMHIVFVHYLEVK 136
                                 *******************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.03315141IPR005559CG-1 DNA-binding domain
SMARTSM010769.0E-8518136IPR005559CG-1 DNA-binding domain
PfamPF038599.8E-5221135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.0E-6491580IPR013783Immunoglobulin-like fold
PfamPF018335.2E-7494573IPR002909IPT domain
SuperFamilySSF812965.6E-17494580IPR014756Immunoglobulin E-set
PROSITE profilePS5029716.016676793IPR020683Ankyrin repeat-containing domain
CDDcd002044.47E-11676791No hitNo description
SuperFamilySSF484031.1E-13677793IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.1E-14679796IPR020683Ankyrin repeat-containing domain
SMARTSM000150.5892914IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.17E-7892943IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.858893922IPR000048IQ motif, EF-hand binding site
PfamPF006120.0016894913IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092915937IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.413916940IPR000048IQ motif, EF-hand binding site
PfamPF006124.7E-4918937IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1073 aa     Download sequence    Send to blast
MADRASYSLA PRLDIEQILL EAQHRWLRPA EICEILRNYQ KFHITSEPPT RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDMLH CYYAHGEENE NFQRRSYWML  120
EPDLMHIVFV HYLEVKGSRT IGGIRENSDL SNSQTSSLLT SSNSVTHTKE PSAHANSACS  180
ITSLTSLYED ADSEDSRQAS SRVRTSPQIG NATVMDKLDP GFLNHYSPHP IQGQSSIPGV  240
TEVSHLHGDR PGDTNYGSCI SEAQRTLGLT SWEQGLEPYV PVYADAFSNT SLTSTQPDTI  300
SISLQQETMM KGKLLAVESA GGEFGNPLPT QPHWQNPLAD NALELPKWSM DSSSNFDLPF  360
DSKLFEQSAH DFQNTLEEFA GHGVFNDQPL HKNLQMQSIN ADSHSVWRTY PDNYMHLDGN  420
VNYALSLKKS LLDGEESLKK VDSFSRWVTK ELGEVDNLQM QSSSGIAWST VECGSVSDDA  480
SLSPSLSHDQ LFSIVDFSPK WAYIDLKTEV LIIGTYLRSQ EQVAKCNWSC MFGEVEVPAE  540
VIADGILSCY APPHSVGQVP FYVTCSNRLA CSEVREFDYR AGFTKDINIL DIYDIASREM  600
LMRFERLLSL KSSNYPNHHS EGVREKRELI TKIISMREEE ECHWIVDPSS DKDVSQQKEK  660
DCLLQKLMKE KLYSWLLHKI MEDGKGPNVL DEKGQGVLHL AAALGYDWAI KPTVTAGVSI  720
NFRDANGWTA LHWAAFCGRQ GPLNLEQTVA ILVSLGAAAG ALTDPTPEFP LGRPPADLAS  780
DNGHKGISGF LAESSLTSFL SNLTMNDQKE AVQTVSDRIA TPVYDSDEIL SLKDSLTAVC  840
NATQAADRIH QMFRMQSFQR KQLSESGHGV SDEHAISLLT AKARRPLHID GVAHAAATQI  900
QKKYRGWKKR KEFLLIRQRI VKIQAHVRGH QVRKQYRTII WSVGILEKVI LRWRRKGSGL  960
RGFRRDAITK EPDPQCTPSK EDDYDFLKEG RKQTEERLQK ALTRVKSMAQ NPEGRGQYRR  1020
LLTLVQGIRE NKACDMVLSS TEEAGEGEGD GDEDFIDIDS LLDDETFMSI AFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017619166.10.0PREDICTED: calmodulin-binding transcription activator 2-like
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1U8IFK60.0A0A1U8IFK6_GOSHI; calmodulin-binding transcription activator 2-like
STRINGGorai.013G061100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]