PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cotton_A_00770_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 127aa MW: 14722.2 Da PI: 10.5334 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.4 | 4.7e-17 | 18 | 113 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfv 80 k+ltp dv rl++p ++eh +g+ +s + +++d+ +++W+++l+ +++ + vltkGW++Fvk gLk+gD v Cotton_A_00770_BGI-A2_v1.0 18 KILTPTDVRV--RLSFPTATTREHfkllEGS--QSLDFQVRDKYSKVWTFRLCTgKNGHLKPVLTKGWRDFVKRMGLKVGDKV 96 6676666664..59***********977555..7889***************6644444459********************* PP EEEE-SSSEE..EEEEE CS B3 81 vFkldgrsefelvvkvf 97 +F ++g+++ +l ++v Cotton_A_00770_BGI-A2_v1.0 97 IFVVHGNHNDQLGIQVK 113 ***99987666666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-21 | 13 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-16 | 15 | 98 | No hit | No description |
SMART | SM01019 | 2.0E-8 | 16 | 114 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.88E-18 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.9E-14 | 18 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.362 | 53 | 116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 127 aa Download sequence Send to blast |
MHMQFSESEP VMKELCSKIL TPTDVRVRLS FPTATTREHF KLLEGSQSLD FQVRDKYSKV 60 WTFRLCTGKN GHLKPVLTKG WRDFVKRMGL KVGDKVIFVV HGNHNDQLGI QVKRNIMLLG 120 NEHWANL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481135.1 | 2e-72 | PREDICTED: B3 domain-containing protein Os02g0764100-like | ||||
TrEMBL | A0A2P5Y966 | 2e-87 | A0A2P5Y966_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.005G241200.1 | 3e-71 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17815 | 4 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01500.1 | 2e-10 | B3 family protein |